RetrogeneDB ID: | retro_sara_713 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_261661:38681..39296(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSSARG00000002565 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 69.95 % |
Parental protein coverage: | 71.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQ-QEGESRLNLVQ |
SL.D.LALVDVLEDKLKGEMMDL.HG.L.LQT.KI.AD..YSVTA.SK.VVVT..V.Q..EGESRLNLVQ | |
Retrocopy | SLEDRLALVDVLEDKLKGEMMDLKHGKLLLQTSKIRAD--YSVTAISKFVVVTVRVHQ<EEGESRLNLVQ |
Parental | RNVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARF-RYLMAEKLGI |
RNV..FKFI.PQ.VK....CII.VVSNP.D...YVTWKLS.LPK..VI.SG..L..A.F...L.AEKLGI | |
Retrocopy | RNV--FKFINPQVVKHFLDCIIAVVSNPADTPSYVTWKLSRLPKNHVIESGGSLVIAQF<LHLTAEKLGI |
Parental | HPSSCHGWILGEHGDSSVAV-WSGVNVAGVSLQELNPDMGTDHDSENWKEVHKMVVESAYEVIKLKGY-- |
HPSSC..WILG.HGD...AV...GV.V..VSLQELNP.MG.DHDSENW...HK.VVESAYEVIKLK.Y.. | |
Retrocopy | HPSSCNRWILGKHGDCCMAV<LKGVYVSCVSLQELNPEMGIDHDSENWIKMHKIVVESAYEVIKLKVYQL |
Parental | TNW |
.NW | |
Retrocopy | DNW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Bos taurus | ENSBTAG00000019603 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022015 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001224 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002565 | 1 retrocopy |
retro_sara_713 ,
|
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022058 | 2 retrocopies |