Parental gene:

LDHB, ENSOCUG00000022015

Aliases:LDHB, LDH-B, LDH-H
Description:lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:8:18476582..18493603(+)


>ENSOCUG00000022015
ATGTGCACTGCTTTGCCACACTCAGGAAGGCGACTGAGGCTCCACAGGACAACTCCCATGGTGCTGACAGCTTGGTGTCC
TCTGCCCTGCCCACTCTCCCCAGCCCCGCTGCCTACAGTGTCTCTGGCTGATGAGCTTGCTCTTGTGGATGTCCTGGAAG
ATAAGCTCAAAGGAGAGATGATGGATCTGCAGCACGGGAGCTTGTTTCTCCAGACACCCAAAATTGTGGCAGATAAAGAC
TACTCCGTGACGGCCAATTCTAAGATCGTGGTGGTGACCGCGGGAGTCCGCCAGCAGGAGGGGGAGAGCCGTCTCAACCT
GGTGCAGAGAAACGTGAATGTCTTCAAGTTCATTATTCCCCAGATTGTCAAGTACAGTCCCAACTGCATCATCATCGTGG
TTTCCAACCCAGTGGACATTCTTACATACGTGACCTGGAAACTAAGTGGACTGCCCAAGCACCGTGTGATTGGAAGTGGG
TGCAATCTGGATTCTGCTAGATTTCGCTATCTCATGGCTGAAAAGCTTGGCATTCATCCCAGCAGCTGCCATGGATGGAT
TTTGGGAGAACATGGAGACTCAAGTGTGGCTGTCTGGAGTGGAGTGAATGTGGCAGGTGTTTCTCTCCAGGAACTGAATC
CAGAGATGGGAACAGACAATGATAGTGAAAACTGGAAGGAGGTGCACAAGATGGTGGTGGAAAGTGCCTATGAAGTCATC
AAGCTAAAAGGGTACACTAACTGGGCTATTGGATTAAGTGTGGCTGATCTCATTGAATCCATGCTGAAAAATCTCTCCAG
GATTCACCCAGTGTCCACAATGGTGAAGGGCATGTATGGCATTGAGAACGAAGTCTTCCTGAGCCTTCCGTGCATCCTCA
ATGCCCGGGGATTAACCAGCGTCATCAACCAGAAGCTCAAGGACGATGAGGTTGCCCAGCTCAAGAAAAGTGCAGACACC
TTGTGGGACATCCAGAAGGACCTCAAAGACCTGTGA

Library Parental gene expression (RPM)
SRP017611_liver 49 .33 RPM
SRP017611_kidney 720 .44 RPM
SRP017611_brain 434 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Bos taurus ENSBTAG00000019603 ortholog_one2one 4 retrogenes
retro_btau_1589, retro_btau_303, retro_btau_451, retro_btau_647,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Cavia porcellus ENSCPOG00000007138 ortholog_one2one 1 retrogene
retro_cpor_762,
Echinops telfairi ENSETEG00000019955 ortholog_one2one 1 retrogene
retro_etel_850,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Myotis lucifugus ENSMLUG00000012155 ortholog_one2many 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Oryctolagus cuniculus ENSOCUG00000015939 within_species_paralog 6 retrogenes
retro_ocun_1597, retro_ocun_1817, retro_ocun_246, retro_ocun_338, retro_ocun_574, retro_ocun_746,
Sorex araneus ENSSARG00000002565 ortholog_one2one 1 retrogene
retro_sara_713,
Sus scrofa ENSSSCG00000000576 ortholog_one2many 1 retrogene
retro_sscr_37,
Ictidomys tridecemlineatus ENSSTOG00000022058 ortholog_one2one 2 retrogenes
retro_itri_501, retro_itri_648,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_805 96.58 87.92
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Download FASTA sequences of all ENSOCUG00000022015 retrocopies