RetrogeneDB ID: | retro_shar_632 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856864.1:1026353..1026721(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15 | ||
Ensembl ID: | ENSSHAG00000013424 | ||
Aliases: | None | ||
Description: | ribosomal protein S15 [Source:HGNC Symbol;Acc:10388] |
Percent Identity: | 64.8 % |
Parental protein coverage: | 85.52 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPM |
M...EQKK..TF.KFTY...DLD.LL...YEQLMQLYSA......N.GL..KQHS.LK.LRKA.KE..P. | |
Retrocopy | MTKLEQKKE-TFSKFTYHSIDLDKLLNIFYEQLMQLYSA**HY*FN*GLWHKQHSILKYLRKANKETLPI |
Parental | E-KPEVVKTHLGDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYK |
E.KP..VK.HL..MIILP..VGSMV.V.NGKTF.Q.EIKP.MI..YLGEFS.TYK | |
Retrocopy | E<KPKIVKVHL*HMIILPKIVGSMVDV*NGKTFSQAEIKPKMIRYYLGEFSNTYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005632 | 13 retrocopies | |
Cavia porcellus | ENSCPOG00000003968 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008645 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002818 | 4 retrocopies | |
Mus musculus | ENSMUSG00000063457 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001651 | 8 retrocopies | |
Otolemur garnettii | ENSOGAG00000015776 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000009317 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000010200 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000024603 | 8 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013424 | 1 retrocopy |
retro_shar_632 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000006423 | 2 retrocopies |