Parental gene:

Rps15, ENSRNOG00000024603

Aliases:None
Description:40S ribosomal protein S15 [Source:UniProtKB/Swiss-Prot;Acc:P62845]
Organism:Rat (Rattus norvegicus)
Coordinates:7:12451929..12453368(-)


>ENSRNOG00000024603
ATGGCCGAAGTGGAGCAGAAGAAAAAGCGAACCTTCCGCAAGTTCACCTACCGTGGCGTGGACCTCGACCAGCTGCTGGA
CATGTCCTATGAGCAGCTGATGCAGTTGTACAGCGCCCGGCAGAGACGGCGCCTGAACCGAGGCCTGCGGAGGAAGCAGC
ACTCACTGCTCAAGCGCTTGAGGAAGGCCAAGAAGGAGGCGCCACCCATGGAGAAGCCGGAGGTCGTGAAGACCCACCTT
AGGGACATGATCATTCTGCCCGAGATGGTCGGCAGCATGGTGGGTGTGTACAACGGCAAGACCTTCAACCAGGTGGAGAT
CAAACCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCTGTGAAGCACGGCCGGCCCGGCATTG
GTGCCACCCACTCCTCCCGATTTATCCCCCTCAAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 96 .56 RPM
SRP017611_kidney 119 .68 RPM
SRP017611_liver 68 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019718 ortholog_one2many 1 retrogene
retro_btau_1856,
Callithrix jacchus ENSCJAG00000005632 possible_ortholog 13 retrogenes
retro_cjac_143, retro_cjac_151, retro_cjac_1517, retro_cjac_1607, retro_cjac_1672, retro_cjac_1714, retro_cjac_2069, retro_cjac_2236, retro_cjac_2596, retro_cjac_2656, retro_cjac_48, retro_cjac_756, retro_cjac_86,
Cavia porcellus ENSCPOG00000003968 possible_ortholog 1 retrogene
retro_cpor_495,
Dasypus novemcinctus ENSDNOG00000000706 possible_ortholog 2 retrogenes
retro_dnov_173, retro_dnov_85,
Echinops telfairi ENSETEG00000008645 possible_ortholog 1 retrogene
retro_etel_2,
Felis catus ENSFCAG00000010769 ortholog_one2many 1 retrogene
retro_fcat_1570,
Homo sapiens ENSG00000115268 ortholog_one2many 4 retrogenes
retro_hsap_1484, retro_hsap_2341, retro_hsap_2650, retro_hsap_530,
Gorilla gorilla ENSGGOG00000002818 possible_ortholog 4 retrogenes
retro_ggor_1136, retro_ggor_116, retro_ggor_141, retro_ggor_1851,
Macaca mulatta ENSMMUG00000003050 possible_ortholog 2 retrogenes
retro_mmul_2130, retro_mmul_838,
Monodelphis domestica ENSMODG00000005119 ortholog_one2many 1 retrogene
retro_mdom_1335,
Mus musculus ENSMUSG00000063457 ortholog_one2many 8 retrogenes
retro_mmus_1270, retro_mmus_208, retro_mmus_2734, retro_mmus_2786, retro_mmus_3166, retro_mmus_3642, retro_mmus_520, retro_mmus_917,
Nomascus leucogenys ENSNLEG00000001651 possible_ortholog 8 retrogenes
retro_nleu_105, retro_nleu_1858, retro_nleu_1922, retro_nleu_2390, retro_nleu_2465, retro_nleu_2559, retro_nleu_461, retro_nleu_544,
Otolemur garnettii ENSOGAG00000015776 possible_ortholog 4 retrogenes
retro_ogar_194, retro_ogar_210, retro_ogar_2237, retro_ogar_96,
Pongo abelii ENSPPYG00000009317 ortholog_one2one 4 retrogenes
retro_pabe_1233, retro_pabe_2321, retro_pabe_67, retro_pabe_893,
Pan troglodytes ENSPTRG00000010200 possible_ortholog 1 retrogene
retro_ptro_122,
Pteropus vampyrus ENSPVAG00000003168 ortholog_one2many 2 retrogenes
retro_pvam_382, retro_pvam_926,
Sarcophilus harrisii ENSSHAG00000013424 possible_ortholog 1 retrogene
retro_shar_632,
Sus scrofa ENSSSCG00000023248 possible_ortholog 1 retrogene
retro_sscr_271,
Ictidomys tridecemlineatus ENSSTOG00000006423 possible_ortholog 2 retrogenes
retro_itri_722, retro_itri_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_178 95.86 100.00
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2. retro_rnor_700 87.79 89.66
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3. retro_rnor_1384 72.18 91.03
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4. retro_rnor_1711 89.66 100.00
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5. retro_rnor_1712 89.66 100.00
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6. retro_rnor_2086 92.47 100.00
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7. retro_rnor_2114 59.03 96.55
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8. retro_rnor_2642 72.73 90.34
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Download FASTA sequences of all ENSRNOG00000024603 retrocopies