RetrogeneDB ID: | retro_sscr_1208 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | X:85310412..85310921(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000031055 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRM | ||
Ensembl ID: | ENSSSCG00000027689 | ||
Aliases: | None | ||
Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
Percent Identity: | 73.1 % |
Parental protein coverage: | 56.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QVSKKFLPGMAVSYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEE |
..S.K.LPGMAV.Y..SK.TL.VGDGF.FMKQN.D.FD.I.TDSSDP.GPAES.FKESYY.LMKTALK.. | |
Retrocopy | RMSFKSLPGMAVGYLNSKMTLLVGDGFAFMKQNWDVFDGIVTDSSDPLGPAESIFKESYYRLMKTALKKD |
Parental | GILCCQGECQWLHLDLIKEMRQFCKSLFPVVDYAYCTIPTYPSGQIGFMLCSK-NPSTNFREPVQLLTQK |
G.LCC.G.CQWLHL.LIKEM.QFC.SLF..V.YAYCTI..YPSGQIGFMLCSK.NPSTNF..PVQ.LTQK | |
Retrocopy | GTLCC*G*CQWLHLNLIKEMGQFCESLFLAVGYAYCTITPYPSGQIGFMLCSK<NPSTNFPKPVQQLTQK |
Parental | QVEQRQLRYYNSDVHRAAFVLPEFARKALND |
.V.Q..L..Y..D.H.AAFVLP.FA.KALND | |
Retrocopy | HVVQMPLKFYKNDLHQAAFVLPYFAYKALND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 19 .64 RPM |
SRP014902_testis | 0 .00 RPM | 40 .74 RPM |
SRP018288_heart | 0 .00 RPM | 8 .83 RPM |
SRP018288_kidney | 0 .00 RPM | 16 .84 RPM |
SRP018288_liver | 0 .00 RPM | 32 .14 RPM |
SRP018288_lung | 0 .00 RPM | 13 .64 RPM |
SRP018856_adipose | 0 .00 RPM | 26 .15 RPM |
SRP035408_brain | 0 .00 RPM | 57 .11 RPM |
SRP035408_liver | 0 .00 RPM | 39 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017585 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016435 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000027689 | 1 retrocopy |
retro_sscr_1208 ,
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