RetrogeneDB ID: | retro_sscr_229 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 10:71512418..71512778(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM136A | ||
Ensembl ID: | ENSSSCG00000026446 | ||
Aliases: | None | ||
Description: | family with sequence similarity 136, member A [Source:HGNC Symbol;Acc:25911] |
Percent Identity: | 82.5 % |
Parental protein coverage: | 86.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAELQQLRVQEAVDSMVKNLERENIRKMQGLMFRCSAGCCEDSQASMQQVHQCIERCHAPLAQAQALVTS |
.AELQQL.VQEAVD..VKNLERENIRKMQGLMFRC.AGCCEDSQASM.QV.QC.ERCHAPLAQAQALVTS | |
Retrocopy | VAELQQLWVQEAVDATVKNLERENIRKMQGLMFRCRAGCCEDSQASMRQVYQCTERCHAPLAQAQALVTS |
Parental | ELEKFQDRLARCTLHCNDKAKDSIDAGSKELQVKRQLECCVTKCVDDHMN |
ELEKFQDRLA.CT.HC.DKAKD.I.AG.KELQ.KRQLE...T..VD.HMN | |
Retrocopy | ELEKFQDRLAGCTMHCSDKAKDAIGAGRKELQGKRQLESWMTRRVDEHMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 11 .55 RPM |
SRP014902_testis | 0 .00 RPM | 45 .97 RPM |
SRP018288_heart | 0 .00 RPM | 25 .17 RPM |
SRP018288_kidney | 0 .00 RPM | 43 .15 RPM |
SRP018288_liver | 0 .00 RPM | 37 .90 RPM |
SRP018288_lung | 0 .00 RPM | 21 .69 RPM |
SRP018856_adipose | 0 .00 RPM | 24 .17 RPM |
SRP035408_brain | 0 .00 RPM | 31 .82 RPM |
SRP035408_liver | 0 .00 RPM | 58 .65 RPM |