Parental gene:

ENSCPOG00000009117

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_37:18427452..18431514(+)


>ENSCPOG00000009117
GTAGCGCAGCGCGCGGTCGCTATGGCGGAGCTGCAGCAGCTCCGGGTGCAGGAGGCGGTGGACTCCATGGTGAAGAGTGT
GGAGAGAGAGAACATCCGGAAGATGCAGGGCCTCATGTTCCGGTGCAGTGCCAGCTGCTGTGAGGATAACCAGGCGTCCA
TGCAGCAGGTGCACCAGTGCATCGAGCGCTGCCACGCACCTCTAGCTCAGGCCCAGGCCTTGGTGACCAATGAGCTGGAA
AAGTTCCAGGACCGCCTGGCCCGGTGCACGATGCATTGCAATGACAAAGCCAAAGATTCAATGGATGCAGGGAATAAGGA
GCCTCAGGTGAAACGGCAGCTGGACAGTTGTGTGGCTAAATGTGTAGATGACCACATGAACCTCATTCCAACTATGACCA
AGAGGATGAAGGAATCCCTCTCGTCTATTGGGAAATAA

Library Parental gene expression (RPM)
SRP017611_liver 7 .75 RPM
SRP017611_kidney 11 .83 RPM
SRP017611_brain 4 .95 RPM
SRP040447_lung 4 .94 RPM
SRP040447_skeletal_muscle 8 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015992 ortholog_one2many 1 retrogene
retro_amel_1454,
Bos taurus ENSBTAG00000008674 ortholog_many2many 2 retrogenes
retro_btau_37, retro_btau_88,
Canis familiaris ENSCAFG00000003353 ortholog_many2many 2 retrogenes
retro_cfam_1042, retro_cfam_148,
Dasypus novemcinctus ENSDNOG00000019447 ortholog_one2many 7 retrogenes
retro_dnov_2036, retro_dnov_2465, retro_dnov_2612, retro_dnov_324, retro_dnov_620, retro_dnov_873, retro_dnov_901,
Dipodomys ordii ENSDORG00000006529 ortholog_one2one 4 retrogenes
retro_dord_365, retro_dord_391, retro_dord_733, retro_dord_778,
Felis catus ENSFCAG00000008119 ortholog_one2many 1 retrogene
retro_fcat_1459,
Homo sapiens ENSG00000035141 possible_ortholog 5 retrogenes
retro_hsap_1855, retro_hsap_2599, retro_hsap_2683, retro_hsap_3136, retro_hsap_3413,
Gorilla gorilla ENSGGOG00000023247 possible_ortholog 6 retrogenes
retro_ggor_1361, retro_ggor_1625, retro_ggor_2155, retro_ggor_2356, retro_ggor_53, retro_ggor_8,
Loxodonta africana ENSLAFG00000002304 possible_ortholog 1 retrogene
retro_lafr_146,
Macropus eugenii ENSMEUG00000015791 ortholog_one2many 8 retrogenes
retro_meug_1126, retro_meug_1351, retro_meug_1545, retro_meug_167, retro_meug_2131, retro_meug_219, retro_meug_457, retro_meug_719,
Macaca mulatta ENSMMUG00000007962 possible_ortholog 5 retrogenes
retro_mmul_1421, retro_mmul_1772, retro_mmul_220, retro_mmul_327, retro_mmul_656,
Monodelphis domestica ENSMODG00000011533 ortholog_many2many 1 retrogene
retro_mdom_65,
Mus musculus ENSMUSG00000057497 ortholog_one2many 2 retrogenes
retro_mmus_240, retro_mmus_3101,
Otolemur garnettii ENSOGAG00000028265 ortholog_one2one 4 retrogenes
retro_ogar_1788, retro_ogar_2273, retro_ogar_379, retro_ogar_684,
Pongo abelii ENSPPYG00000012323 possible_ortholog 6 retrogenes
retro_pabe_1512, retro_pabe_1917, retro_pabe_2297, retro_pabe_2618, retro_pabe_2828, retro_pabe_3032,
Pan troglodytes ENSPTRG00000012030 possible_ortholog 6 retrogenes
retro_ptro_1237, retro_ptro_1523, retro_ptro_1809, retro_ptro_2120, retro_ptro_2318, retro_ptro_3063,
Rattus norvegicus ENSRNOG00000016273 ortholog_one2many 1 retrogene
retro_rnor_1679,
Sus scrofa ENSSSCG00000026446 ortholog_one2many 6 retrogenes
retro_sscr_1075, retro_sscr_229, retro_sscr_230, retro_sscr_309, retro_sscr_335, retro_sscr_914,
Ictidomys tridecemlineatus ENSSTOG00000008343 ortholog_one2one 1 retrogene
retro_itri_1026,
Tupaia belangeri ENSTBEG00000017418 ortholog_one2many 8 retrogenes
retro_tbel_1377, retro_tbel_1875, retro_tbel_2479, retro_tbel_2516, retro_tbel_3373, retro_tbel_3703, retro_tbel_401, retro_tbel_999,
Tursiops truncatus ENSTTRG00000001198 ortholog_one2many 5 retrogenes
retro_ttru_1110, retro_ttru_1771, retro_ttru_1903, retro_ttru_396, retro_ttru_550,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_221 57.89 88.28
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Download FASTA sequences of all ENSCPOG00000009117 retrocopies