RetrogeneDB ID: | retro_sscr_697 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:42809377..42809723(+) | ||
Located in intron of: | ENSSSCG00000008060 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSSSCG00000009146 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 70.69 % |
Parental protein coverage: | 97.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
M.Q.L..RRR.SYNTAS.KTRLSRTPG.RI.YLYTKK.GKAP..A.GVCPGRLRGVRA..PKVL.RLSK. | |
Retrocopy | MAQWLMFRRRRSYNTASHKTRLSRTPGDRIIYLYTKKAGKAPRCARGVCPGRLRGVRAAGPKVLPRLSKS |
Parental | KKHVSRAYGGSMCAKCVRDRIKRAFL-IEEQKIVV-KVLKAQAQSQ |
KKHVSRA.GGS.CA.CV.DRIK.......E....V.KVL.A.AQSQ | |
Retrocopy | KKHVSRAWGGSVCAECVCDRIKQVCF>LIEEQKIVVKVLEAPAQSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 100 .88 RPM |
SRP014902_testis | 0 .42 RPM | 599 .73 RPM |
SRP018288_heart | 0 .10 RPM | 233 .25 RPM |
SRP018288_kidney | 0 .00 RPM | 294 .53 RPM |
SRP018288_liver | 0 .16 RPM | 280 .48 RPM |
SRP018288_lung | 0 .00 RPM | 321 .06 RPM |
SRP018856_adipose | 0 .05 RPM | 673 .61 RPM |
SRP035408_brain | 0 .32 RPM | 263 .77 RPM |
SRP035408_liver | 0 .00 RPM | 204 .49 RPM |