Parental gene:

RPL34, ENSDNOG00000011179

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_4377:44393..47928(+)


>ENSDNOG00000011179
ATGGTCCAGCGTTTGACATACCGTCGTAGGCTATCCTACAATACTGCTTCTAACAAAACTAGGCTATCCCGGACCCCTGG
TAATAGAATTGTTTATCTTTATACCAAGAAGGTTGGAAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGTCGACTTC
GAGGGGTTCGTGCTGTGAGACCTAAAGTTCTTATGAGGTTATCTAAAACAAAAAAACATGTCAGCAGAGCCTATGGTGGT
TCCATGTGTGCTAAATGTGTCCGTGACAGGATCAAGCGTGCTTTCCTGATTGAGGAGCAGAAAATCGTTGTGAAAGTGTT
GAAAGCACAAGCACAGAGTCAGAAAGCTAAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 104 .23 RPM
SRP012922_cerebellum 55 .81 RPM
SRP012922_heart 69 .38 RPM
SRP012922_kidney 133 .06 RPM
SRP012922_liver 60 .84 RPM
SRP012922_lung 161 .28 RPM
SRP012922_quadricep_muscle 78 .41 RPM
SRP012922_spleen 168 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001758 ortholog_one2one 20 retrogenes
Bos taurus ENSBTAG00000014226 ortholog_one2one 13 retrogenes
Callithrix jacchus ENSCJAG00000015993 ortholog_one2many 4 retrogenes
Cavia porcellus ENSCPOG00000000802 ortholog_one2one 6 retrogenes
Equus caballus ENSECAG00000019719 ortholog_one2many 1 retrogene
Erinaceus europaeus ENSEEUG00000010390 ortholog_one2one 5 retrogenes
Felis catus ENSFCAG00000015502 ortholog_one2one 16 retrogenes
Homo sapiens ENSG00000109475 ortholog_one2one 33 retrogenes
Gorilla gorilla ENSGGOG00000007650 ortholog_one2one 32 retrogenes
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
Microcebus murinus ENSMICG00000002180 ortholog_one2one 32 retrogenes
Myotis lucifugus ENSMLUG00000000464 ortholog_one2many 4 retrogenes
Macaca mulatta ENSMMUG00000011901 ortholog_one2many 1 retrogene
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
Mustela putorius furo ENSMPUG00000008873 ortholog_one2many 17 retrogenes
Mus musculus ENSMUSG00000062006 ortholog_one2many 26 retrogenes
Nomascus leucogenys ENSNLEG00000012934 ortholog_one2many 20 retrogenes
Otolemur garnettii ENSOGAG00000006774 ortholog_one2many 1 retrogene
Pongo abelii ENSPPYG00000014988 ortholog_one2many 18 retrogenes
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
Pan troglodytes ENSPTRG00000016353 ortholog_one2one 31 retrogenes
Pteropus vampyrus ENSPVAG00000005914 ortholog_one2one 9 retrogenes
Rattus norvegicus ENSRNOG00000016387 ortholog_one2many 36 retrogenes
Sorex araneus ENSSARG00000000177 ortholog_one2one 8 retrogenes
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
Sus scrofa ENSSSCG00000009146 ortholog_one2one 8 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000025964 ortholog_one2one 14 retrogenes
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
Tarsius syrichta ENSTSYG00000001781 ortholog_one2one 34 retrogenes
Tursiops truncatus ENSTTRG00000003443 ortholog_one2one 6 retrogenes
Vicugna pacos ENSVPAG00000005953 ortholog_one2one 9 retrogenes
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_59 85.47 99.15
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2. retro_dnov_88 62.89 80.34
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3. retro_dnov_252 84.75 100.00
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4. retro_dnov_262 82.09 57.26
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5. retro_dnov_325 93.22 100.00
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6. retro_dnov_339 81.20 100.00
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7. retro_dnov_430 96.05 64.96
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8. retro_dnov_553 74.79 100.00
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9. retro_dnov_565 78.43 85.47
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10. retro_dnov_606 89.47 97.44
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11. retro_dnov_635 74.77 90.60
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12. retro_dnov_658 71.43 86.32
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13. retro_dnov_862 90.60 100.00
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14. retro_dnov_978 84.07 94.87
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15. retro_dnov_1172 69.09 91.45
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16. retro_dnov_1775 80.87 97.44
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17. retro_dnov_2020 88.03 100.00
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18. retro_dnov_2025 55.93 97.44
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19. retro_dnov_2079 83.33 96.58
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20. retro_dnov_2127 88.98 100.00
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21. retro_dnov_2137 77.98 93.16
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22. retro_dnov_2275 82.35 58.12
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23. retro_dnov_2385 78.45 98.29
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24. retro_dnov_2501 97.44 100.00
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25. retro_dnov_2627 77.00 83.76
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26. retro_dnov_2651 77.39 96.58
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Download FASTA sequences of all ENSDNOG00000011179 retrocopies