RetrogeneDB ID:

retro_psin_60

Retrocopy
location
Organism:Chinese softshell turtle (Pelodiscus sinensis)
Coordinates:JH211521.1:2200706..2200892(+)
Located in intron of:ENSPSIG00000012718
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL34
Ensembl ID:ENSPSIG00000003295
Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]


Retrocopy-Parental alignment summary:






>retro_psin_60
AGGTTGTCCTACAACACAGCCTCTAACAAGACCAGGCTTTCTTGGACATCAGGTAACAGGATTATTTACCTTTGCACCAA
CGAAGTTGGCAAAGAACCAAAGTCTGCATGTGGTGTGTGTCCAGGAAGACTTCATGGTATTCATGCTGTGTGCCCTACAG
TCCTTATGAGATTATTAAAAACAAAG

ORF - retro_psin_60 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.03 %
Parental protein coverage: 52.99 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTK
RLSYNTASNKTRLS.T.GNRI.YL.T..VGK.PKSACGVCPGRL.G..AV.P.VLMRL.KTK
RetrocopyRLSYNTASNKTRLSWTSGNRIIYLCTNEVGKEPKSACGVCPGRLHGIHAVCPTVLMRLLKTK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pelodiscus sinensis was not studied using RNA-Seq expression data.
Pelodiscus sinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_psin_60 retrocopy.
Pelodiscus sinensis was not studied using FANTOM5 data.
retro_psin_60 was not experimentally validated.

Retrocopy orthology:
Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 39 parental genes, and 524 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000175820 retrocopies
Bos taurus ENSBTAG0000001422613 retrocopies
Choloepus hoffmanni ENSCHOG0000000907410 retrocopies
Callithrix jacchus ENSCJAG000000159934 retrocopies
Cavia porcellus ENSCPOG000000008026 retrocopies
Dasypus novemcinctus ENSDNOG0000001117926 retrocopies
Equus caballus ENSECAG000000197191 retrocopy
Erinaceus europaeus ENSEEUG000000103905 retrocopies
Echinops telfairi ENSETEG0000000371553 retrocopies
Felis catus ENSFCAG0000001550216 retrocopies
Homo sapiens ENSG0000010947533 retrocopies
Gorilla gorilla ENSGGOG0000000765032 retrocopies
Gadus morhua ENSGMOG000000099821 retrocopy
Loxodonta africana ENSLAFG000000326156 retrocopies
Macropus eugenii ENSMEUG000000093613 retrocopies
Microcebus murinus ENSMICG0000000218032 retrocopies
Myotis lucifugus ENSMLUG000000004644 retrocopies
Macaca mulatta ENSMMUG000000119011 retrocopy
Monodelphis domestica ENSMODG000000206013 retrocopies
Mustela putorius furoENSMPUG0000000887317 retrocopies
Mus musculus ENSMUSG0000006200626 retrocopies
Nomascus leucogenys ENSNLEG0000001293420 retrocopies
Ornithorhynchus anatinus ENSOANG000000078561 retrocopy
Otolemur garnettii ENSOGAG000000067741 retrocopy
Ochotona princeps ENSOPRG0000000178011 retrocopies
Pongo abelii ENSPPYG0000001498818 retrocopies
Pelodiscus sinensis ENSPSIG00000003295 1 retrocopy
retro_psin_60 ,
Pan troglodytes ENSPTRG0000001635331 retrocopies
Pteropus vampyrus ENSPVAG000000059149 retrocopies
Rattus norvegicus ENSRNOG0000001638736 retrocopies
Sorex araneus ENSSARG000000001778 retrocopies
Sarcophilus harrisii ENSSHAG000000013571 retrocopy
Sarcophilus harrisii ENSSHAG000000020523 retrocopies
Sus scrofa ENSSSCG000000091468 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000002596414 retrocopies
Tarsius syrichta ENSTSYG0000000178134 retrocopies
Tursiops truncatus ENSTTRG000000034436 retrocopies
Vicugna pacos ENSVPAG000000059539 retrocopies
Xenopus tropicalis ENSXETG000000210951 retrocopy



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