RetrogeneDB ID: | retro_tsyr_1411 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_4311:42176..42756(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPC | ||
Ensembl ID: | ENSTSYG00000003305 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:5035] |
Percent Identity: | 59.7 % |
Parental protein coverage: | 63.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | GSVPEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSG-NTSRRGKSGFN |
G.V....S.....SSSFD..Y....D.Y.RMY.YPA...PP......VVPS..QRVSG.NTS.R...GFN | |
Retrocopy | GKVNVKGSAVKMYSSSFD--YHLEQDCYARMYCYPAHASPPITTPQCVVPSEHQRVSG<NTSQRTERGFN |
Parental | SKSGQRGSSSKSGKLKGDDI-QAIKKELSQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKVEEEQTTTSV |
SKS.Q..SSS.SGKLK.DD...A.K..L.QIKQKVD.LLENL.K..KE.SKQ..E.KNDK.EEEQ..... | |
Retrocopy | SKSRQQESSSTSGKLKEDDLHEAVKQKLIQIKQKVDHLLENLDKVGKEHSKQEAETKNDKSEEEQSSSFM |
Parental | KKDETNVKMESEG-GADDSAEE-GDLLDDDDNEDRGD-DQLELIKDDEKEAEEGEDDRDSA |
.K.ET.V..ESEG.G.DDSAEE.G.LLD.D.....G...QLELIKDDEKE.EE.EDDRDSA | |
Retrocopy | NKNETSVQKESEG<GTDDSAEE<GNLLD-DNDNENGV>GQLELIKDDEKEGEEREDDRDSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005504 | 1 retrocopy | |
Homo sapiens | ENSG00000092199 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023015 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014809 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000000164 | 2 retrocopies | |
Mus musculus | ENSMUSG00000060373 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015029 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012543 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005593 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000006118 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011621 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011514 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000003305 | 3 retrocopies |
retro_tsyr_1004, retro_tsyr_1326, retro_tsyr_1411 ,
|
Tursiops truncatus | ENSTTRG00000016055 | 2 retrocopies |