Parental gene:

Hnrnpc, ENSMUSG00000060373

Aliases:Hnrnpc, AL022939, D14Wsu171e, Hnrpc, Hnrpc1, Hnrpc2, hnRNPC1, hnRNPC2, hnrnp-C
Description:heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
Organism:Mouse (Mus musculus)
Coordinates:14:52073379..52104028(-)


>ENSMUSG00000060373
ATGGCTAGCAATGTTACCAACAAGACAGATCCTCGGTCCATGAATTCCCGTGTATTCATTGGGAATCTCAACACTCTGGT
GGTCAAGAAGTCTGATGTGGAGGCCATCTTTTCAAAGTATGGCAAAATTGTGGGCTGCTCTGTGCATAAAGGCTTTGCCT
TTGTCCAGTATGTTAATGAAAGAAATGCCCGAGCTGCTGTAGCTGGCGAGGATGGCAGAATGATTGCTGGCCAGGTTTTA
GATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAAAAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGGTC
AGTACCAGAACACCCTTCTCCGTCCCCTCTACTCAGTTCCTCATTTGACTTGGACTATGACTTTCAACGGGATTATTATG
ACAGGATGTACAGTTACCCAGCGCGGGTTCCTCCTCCTCCTCCTATTGCTCGAGCTGTGGTGCCTTCCAAACGTCAGCGT
GTTTCAGGGAACACCTCACGAAGGGGCAAAAGTGGATTCAATTCGAAGAGTGGACAAAGGGGATCTTCTTCCAAGTCTGG
AAAATTGAAAGGTGATGACCTTCAGGCCATTAAAAAGGAGCTGACTCAGATAAAACAAAAAGTGGATTCTCTTCTGGAAA
GCCTGGAAAAAATTGAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTTCTCATCCCCAGTAGAGATGAAGAATGAAAAG
TCTGAAGAAGAGCAGAGCAGCGCCTCTGTGAAGAAAGATGAGACTAATGTGAAGATGGAGTCTGAGGCAGGTGCAGATGA
CTCTGCTGAGGAGGGTGACCTGCTGGATGATGACGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGAAGGATGATG
AAAAAGAGCCTGAGGAAGGAGAAGACGACAGAGACAGCGCCAATGGGGAGGATGACTCTTAA

Library Parental gene expression (RPM)
SRP007412_brain 110 .48 RPM
SRP007412_cerebellum 121 .32 RPM
SRP007412_heart 68 .55 RPM
SRP007412_kidney 87 .30 RPM
SRP007412_liver 63 .96 RPM
SRP007412_testis 61 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005504 possible_ortholog 1 retrogene
retro_cfam_1140,
Homo sapiens ENSG00000092199 ortholog_one2one 2 retrogenes
retro_hsap_1624, retro_hsap_3740,
Gorilla gorilla ENSGGOG00000023015 ortholog_one2one 1 retrogene
retro_ggor_1046,
Macaca mulatta ENSMMUG00000014809 ortholog_one2one 4 retrogenes
retro_mmul_1112, retro_mmul_205, retro_mmul_468, retro_mmul_503,
Mustela putorius furo ENSMPUG00000000164 possible_ortholog 2 retrogenes
retro_mputfur_231, retro_mputfur_241,
Nomascus leucogenys ENSNLEG00000014362 ortholog_one2one 2 retrogenes
retro_nleu_1828, retro_nleu_59,
Oryctolagus cuniculus ENSOCUG00000015029 possible_ortholog 1 retrogene
retro_ocun_138,
Otolemur garnettii ENSOGAG00000012543 ortholog_one2many 1 retrogene
retro_ogar_165,
Pongo abelii ENSPPYG00000005593 ortholog_one2one 6 retrogenes
retro_pabe_1116, retro_pabe_1263, retro_pabe_1342, retro_pabe_2, retro_pabe_722, retro_pabe_780,
Pan troglodytes ENSPTRG00000006118 ortholog_one2one 2 retrogenes
retro_ptro_1089, retro_ptro_2539,
Rattus norvegicus ENSRNOG00000011621 ortholog_one2many 1 retrogene
retro_rnor_922,
Tupaia belangeri ENSTBEG00000011514 possible_ortholog 11 retrogenes
retro_tbel_1738, retro_tbel_2114, retro_tbel_2475, retro_tbel_2838, retro_tbel_2849, retro_tbel_3094, retro_tbel_3293, retro_tbel_3776, retro_tbel_3903, retro_tbel_3937, retro_tbel_818,
Tarsius syrichta ENSTSYG00000003305 ortholog_one2one 3 retrogenes
retro_tsyr_1004, retro_tsyr_1326, retro_tsyr_1411,
Tursiops truncatus ENSTTRG00000016055 ortholog_one2one 2 retrogenes
retro_ttru_1299, retro_ttru_1490,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1388 83.43 52.72
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Download FASTA sequences of all ENSMUSG00000060373 retrocopies