RetrogeneDB ID: | retro_tsyr_1541 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_484106:566..969(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HRSP12 | ||
Ensembl ID: | ENSTSYG00000003085 | ||
Aliases: | None | ||
Description: | heat-responsive protein 12 [Source:HGNC Symbol;Acc:16897] |
Percent Identity: | 77.94 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSSLIRKVISTA-KAPGAIGPYSQAVLVDRTLYISGQIGMNPSSGQLVPGGVTEEANQALKNMGEILKAA |
MSSLIRKVI.TA.K..G.........LV.RTLYISG.IGM.PSSGQL.PGGV.EEANQALKNMGEILK.. | |
Retrocopy | MSSLIRKVITTA>KPQGPL-VHTVKLLVNRTLYISGEIGMDPSSGQLLPGGVMEEANQALKNMGEILKIV |
Parental | GCDFTNVVKTTVLLADINDFNTVNEIY-QYFKSSFPARAAYQVAALPKGGRVEIEAVAVQGPLTTA |
GCDFTNVVKTTVLLA.INDFNTVNEIY.QYFKSSFPA.AAYQVA.L.KGG..EIEAVAVQ...TTA | |
Retrocopy | GCDFTNVVKTTVLLANINDFNTVNEIYKQYFKSSFPASAAYQVAVLSKGGQAEIEAVAVQRFFTTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000575 | 1 retrocopy | |
Bos taurus | ENSBTAG00000012595 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000030250 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001278 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000015560 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000025138 | 3 retrocopies | |
Felis catus | ENSFCAG00000002167 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001185 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002078 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011825 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000006575 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015253 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000021532 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001465 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000006079 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011452 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000003085 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000016066 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008277 | 3 retrocopies |