RetrogeneDB ID: | retro_cjac_1702 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 19:21294111..21294366(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000015560 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.82 % |
Parental protein coverage: | 62.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VAEEAKQALKNMNEILKAASCDFTNVVKTTVLLADINDFNTVNE-IYKQYFKSNFPARAAY-QVAALPKG |
.A.EAKQALKNM...LKAA.CDFT.VVK.TV.LADIN.F.TVNE.IYKQYFK...P..AAY..VA.LPKG | |
Retrocopy | LAKEAKQALKNMSKNLKAAGCDFTSVVKATVSLADINGFGTVNE<IYKQYFKRSLPESAAY>LVAILPKG |
Parental | ARIEIEAVAVQGPLTTA |
...E.E.V..QGPLT.A | |
Retrocopy | C*VETEEVTLQGPLTMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 9 .07 RPM |
SRP051959_heart | 0 .00 RPM | 3 .24 RPM |
SRP051959_kidney | 0 .00 RPM | 76 .01 RPM |
SRP051959_liver | 0 .00 RPM | 77 .89 RPM |
SRP051959_lung | 0 .00 RPM | 5 .11 RPM |
SRP051959_lymph_node | 0 .00 RPM | 4 .52 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 5 .22 RPM |
SRP051959_spleen | 0 .00 RPM | 3 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_284 |
Pan troglodytes | retro_ptro_234 |
Pongo abelii | retro_pabe_387 |
Macaca mulatta | retro_mmul_558 |