RetrogeneDB ID: | retro_cfam_668 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 15:55575617..55576021(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000030250 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASLIRKVISTAK-APGAIGPYSQAVLVDRTIYISGQLGMDPSSGQLVPGGVAEEAKQALTNMGEILKAA |
MAS.IRKV....K.A.G..G.YSQAV.V.RT..IS.QLG.DPS.GQLVPGG..EEAKQAL.N..EILKAA | |
Retrocopy | MASSIRKVTPMCK<ALGTTGSYSQAV*VGRTTCISAQLGRDPSRGQLVPGGPVEEAKQALINTDEILKAA |
Parental | GCDFTNVVKTTVLLADINDFNTVNEVYKQYFKSSFPARAAYQVAALPKGGRVEIEAVAVLGPLTTASL |
GCDFTNV.KTTVLLA..NDF..V...YKQ.FKSSFP..AA.QV.ALPKGG.VE..A.AV.G.LTTASL | |
Retrocopy | GCDFTNV-KTTVLLAAMNDFSAV-KIYKQLFKSSFPTTAAHQVVALPKGGHVETHAGAVQGSLTTASL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 12 .56 RPM |
SRP017611_brain | 0 .00 RPM | 7 .78 RPM |
SRP017611_kidney | 0 .00 RPM | 236 .22 RPM |
SRP017611_liver | 0 .00 RPM | 144 .16 RPM |