RetrogeneDB ID: | retro_tsyr_1583 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_49912:6637..6963(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL11 | ||
Ensembl ID: | ENSTSYG00000001349 | ||
Aliases: | None | ||
Description: | ribosomal protein L11 [Source:HGNC Symbol;Acc:10301] |
Percent Identity: | 82.73 % |
Parental protein coverage: | 61.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSK-ARYTVRSFGIRRNEKIA |
MAQ.QGEK.NPM.ELRI.KLCLNICVGESGDRLT.A.KVLEQLTGQTP.FSK.ARY.VRS..IRRNEK.A | |
Retrocopy | MAQNQGEKKNPMQELRICKLCLNICVGESGDRLTWATKVLEQLTGQTPMFSK<ARYSVRSLNIRRNEKLA |
Parental | VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGI |
VHCTV.GAKAEEILEKGLKV.EY.LRK.NFSD.GNF..GI | |
Retrocopy | VHCTV*GAKAEEILEKGLKVQEYKLRKKNFSDNGNFSLGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020905 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013232 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020953 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011230 | 2 retrocopies | |
Homo sapiens | ENSG00000142676 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000014628 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000030853 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000013738 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002445 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000012828 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059291 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000000321 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022928 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001736 | 6 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004282 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026260 | 9 retrocopies | |
Sus scrofa | ENSSSCG00000024260 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000001349 | 6 retrocopies |