Parental gene: | RPL11, ENSPPYG00000001736 |
| Aliases: | None |
| Description: | 60S ribosomal protein L11 [Source:RefSeq peptide;Acc:NP_001125385] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:206726083..206732455(-) |
>ENSPPYG00000001736
ATGGCGCAGGATCAAGGTGAAAAGGAGAACCCCATGCGGGAACTTCGCATCCGCAAACTCTGTCTCAACATCTGTGTTGG
AGAGAGTGGAGACAGACTGACCCGAGCAGCCAAGGTGTTGGAGCAGCTCACAGGGCAGACCCCTGTGTTTTCCAAAGCTA
GGTACACTGTCAGATCCTTTGGCATCCGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAA
GAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTT
TGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTGGTGC
TGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAG
GAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATCCTTCCTGGCAAATAA
ATGGCGCAGGATCAAGGTGAAAAGGAGAACCCCATGCGGGAACTTCGCATCCGCAAACTCTGTCTCAACATCTGTGTTGG
AGAGAGTGGAGACAGACTGACCCGAGCAGCCAAGGTGTTGGAGCAGCTCACAGGGCAGACCCCTGTGTTTTCCAAAGCTA
GGTACACTGTCAGATCCTTTGGCATCCGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAA
GAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTT
TGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTGGTGC
TGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAG
GAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATCCTTCCTGGCAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 192 .85 RPM |
| SRP007412_cerebellum | 179 .24 RPM |
| SRP007412_heart | 198 .35 RPM |
| SRP007412_kidney | 581 .36 RPM |
| SRP007412_liver | 455 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020905 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013232 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020953 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000011230 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000142676 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014628 | possible_ortholog | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000030853 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000013738 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000002445 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000012828 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000059291 | ortholog_one2many | 3 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000000321 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000022928 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000004282 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000026260 | ortholog_one2one | 9 retrogenes | |
| Sus scrofa | ENSSSCG00000024260 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000001349 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_612 | 72.90 | 86.52 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_615 | 75.51 | 53.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_964 | 81.08 | 61.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1478 | 72.64 | 59.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1946 | 73.05 | 77.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2686 | 82.79 | 68.54 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000001736 retrocopies