Parental gene:

RPL11, ENSPPYG00000001736

Aliases:None
Description:60S ribosomal protein L11 [Source:RefSeq peptide;Acc:NP_001125385]
Organism:Orangutan (Pongo abelii)
Coordinates:1:206726083..206732455(-)


>ENSPPYG00000001736
ATGGCGCAGGATCAAGGTGAAAAGGAGAACCCCATGCGGGAACTTCGCATCCGCAAACTCTGTCTCAACATCTGTGTTGG
AGAGAGTGGAGACAGACTGACCCGAGCAGCCAAGGTGTTGGAGCAGCTCACAGGGCAGACCCCTGTGTTTTCCAAAGCTA
GGTACACTGTCAGATCCTTTGGCATCCGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAA
GAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTT
TGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTGGTGC
TGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAG
GAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATCCTTCCTGGCAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 192 .85 RPM
SRP007412_cerebellum 179 .24 RPM
SRP007412_heart 198 .35 RPM
SRP007412_kidney 581 .36 RPM
SRP007412_liver 455 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020905 ortholog_one2one 1 retrogene
retro_btau_267,
Canis familiaris ENSCAFG00000013232 ortholog_one2many 2 retrogenes
retro_cfam_1059, retro_cfam_543,
Callithrix jacchus ENSCJAG00000020953 ortholog_one2one 1 retrogene
retro_cjac_790,
Dasypus novemcinctus ENSDNOG00000011230 ortholog_one2one 2 retrogenes
retro_dnov_1453, retro_dnov_605,
Homo sapiens ENSG00000142676 ortholog_one2one 6 retrogenes
retro_hsap_1159, retro_hsap_1801, retro_hsap_2272, retro_hsap_3238, retro_hsap_606, retro_hsap_712,
Gorilla gorilla ENSGGOG00000014628 possible_ortholog 6 retrogenes
retro_ggor_1192, retro_ggor_1325, retro_ggor_1690, retro_ggor_2204, retro_ggor_533, retro_ggor_603,
Loxodonta africana ENSLAFG00000030853 ortholog_one2one 2 retrogenes
retro_lafr_371, retro_lafr_434,
Macropus eugenii ENSMEUG00000013738 ortholog_one2one 3 retrogenes
retro_meug_488, retro_meug_517, retro_meug_633,
Macaca mulatta ENSMMUG00000002445 possible_ortholog 3 retrogenes
retro_mmul_2039, retro_mmul_2415, retro_mmul_2462,
Monodelphis domestica ENSMODG00000012828 ortholog_one2one 1 retrogene
retro_mdom_641,
Mus musculus ENSMUSG00000059291 ortholog_one2many 3 retrogenes
retro_mmus_144, retro_mmus_146, retro_mmus_78,
Ornithorhynchus anatinus ENSOANG00000000321 ortholog_one2one 1 retrogene
retro_oana_49,
Oryctolagus cuniculus ENSOCUG00000022928 ortholog_one2one 1 retrogene
retro_ocun_1387,
Pteropus vampyrus ENSPVAG00000004282 ortholog_one2one 1 retrogene
retro_pvam_1068,
Rattus norvegicus ENSRNOG00000026260 ortholog_one2one 9 retrogenes
retro_rnor_1735, retro_rnor_2287, retro_rnor_2314, retro_rnor_2690, retro_rnor_271, retro_rnor_2725, retro_rnor_668, retro_rnor_795, retro_rnor_919,
Sus scrofa ENSSSCG00000024260 ortholog_one2one 4 retrogenes
retro_sscr_1048, retro_sscr_1049, retro_sscr_1074, retro_sscr_819,
Tarsius syrichta ENSTSYG00000001349 ortholog_one2one 6 retrogenes
retro_tsyr_1138, retro_tsyr_127, retro_tsyr_1583, retro_tsyr_1605, retro_tsyr_516, retro_tsyr_520,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_612 72.90 86.52
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2. retro_pabe_615 75.51 53.93
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3. retro_pabe_964 81.08 61.80
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4. retro_pabe_1478 72.64 59.55
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5. retro_pabe_1946 73.05 77.53
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6. retro_pabe_2686 82.79 68.54
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Download FASTA sequences of all ENSPPYG00000001736 retrocopies