RetrogeneDB ID: | retro_tsyr_66 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_1545:24956..25289(-) | ||
Located in intron of: | ENSTSYG00000006748 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSTSYG00000000679 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 63.06 % |
Parental protein coverage: | 58.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQ.IKCVVVGD.AVGKTCLLI.YTTN.FP..Y.PTVF.NY.......G....L.L.DTAGQE.YDRL..L | |
Retrocopy | MQSIKCVVVGDRAVGKTCLLICYTTNAFPKVYIPTVFNNYRAQSAVDGCTVNLDLCDTAGQEEYDRLCTL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL |
S.PQT.VF..CF...SP.S.ENV..KW.PE..HHCP..P.L | |
Retrocopy | SHPQTNVFVICFFIASPPS*ENVRHKWHPEVCHHCPHVPIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000010374 | 3 retrocopies | |
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000805 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000679 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005708 | 2 retrocopies |