RetrogeneDB ID: | retro_tsyr_1796 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_591:83607..84375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSTSYG00000001196 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] |
Percent Identity: | 82.1 % |
Parental protein coverage: | 55.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSI |
K.PAED.EEEQA.KRSRNTDEMVE..ILLQSK....V.GKGGKNIK.L.TDYNASVSVPDSSGPE.ILSI | |
Retrocopy | KHPAEDTEEEQALKRSRNTDEMVESHILLQSKCVEIVTGKGGKNIKVLHTDYNASVSVPDSSGPEHILSI |
Parental | SADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGNDFDCELRLLIHQSLAGGII |
SADIET.GEILKKIIPTL.EGLQLPSP.ATSQ.PLESD.VECLNYQHYKG.DFDCELRLLIHQ.LAGG.I | |
Retrocopy | SADIETMGEILKKIIPTLKEGLQLPSPNATSQVPLESDTVECLNYQHYKGSDFDCELRLLIHQRLAGGVI |
Parental | GVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFY |
.VKGAKIKELRENTQ..IKLFQECCP.STDRVVLI..KPDRVV.CIKII.DLISESPIK..AQ.YD..FY | |
Retrocopy | RVKGAKIKELRENTQ-IIKLFQECCPRSTDRVVLIRVKPDRVVKCIKIIFDLISESPIKECAQLYDTIFY |
Parental | DETYDYGGFTMIFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSR |
DETYDY.GFT.I.D.R.G.PV.FPMRG...FDRMPPG.GG.PMPPSR | |
Retrocopy | DETYDYTGFTIILDGRCGCPV*FPMRGSRNFDRMPPGQGGHPMPPSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000026 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000016024 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015500 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000026567 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021546 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003486 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019327 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001196 | 3 retrocopies |
retro_tsyr_1664, retro_tsyr_1796 , retro_tsyr_2149,
|
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |