RetrogeneDB ID: | retro_dnov_1433 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_203333:3252..4029(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSDNOG00000000026 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] |
Percent Identity: | 76.52 % |
Parental protein coverage: | 66.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF |
LQLP.PTATSQLPL.SDAV.C.NYQH.KGSDFD....L.IHQSLA.GI.GVKG.K.KEL.ENTQTTIKLF | |
Retrocopy | LQLPLPTATSQLPLRSDAVGCFNYQHCKGSDFD--KKLSIHQSLAKGILGVKGTKMKEL*ENTQTTIKLF |
Parental | QECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV |
..CCPHSTDRV.LI.G..DRVVECIKIIL...SESPIKG.AQPYDP..YDETYDY.GFTMMFDD..G.PV | |
Retrocopy | *DCCPHSTDRVILIEGNSDRVVECIKIILNFMSESPIKGCAQPYDPIVYDETYDYDGFTMMFDDHCGYPV |
Parental | GFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGR-GGSRARNLPLPP--PPPPRGG |
GFP..GR.GFDRMPPG.GG.PMPPSRRDYDDMS...G.P.PP....G..GGSRA.NLPLPP..PPPPRGG | |
Retrocopy | GFPILGRSGFDRMPPGEGGCPMPPSRRDYDDMSTHQGLP-PPLPQ*GG>GGSRAWNLPLPPPSPPPPRGG |
Parental | DLMAYDRRGRPGDRYDGMVGFSADETW-DSAIDTWSPSEWQMAYEPQGGSGYDY |
DL..YD.RGRP.D.Y.GMVGF.ADETW.DSAI.TWSPS.WQ.AYEPQGGS.YDY | |
Retrocopy | DLTTYDSRGRPEDCYNGMVGFTADETW<DSAIETWSPSQWQVAYEPQGGSIYDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 410 .72 RPM |
SRP012922_cerebellum | 0 .27 RPM | 287 .58 RPM |
SRP012922_heart | 0 .00 RPM | 109 .98 RPM |
SRP012922_kidney | 0 .00 RPM | 225 .61 RPM |
SRP012922_liver | 0 .00 RPM | 191 .03 RPM |
SRP012922_lung | 0 .00 RPM | 315 .53 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 124 .10 RPM |
SRP012922_spleen | 0 .00 RPM | 437 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000026 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008688 | 6 retrocopies | |
Dipodomys ordii | ENSDORG00000016024 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015500 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000026567 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021546 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003486 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019327 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001196 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |