RetrogeneDB ID: | retro_dnov_2316 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6315:4603..5662(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSDNOG00000000026 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] |
Percent Identity: | 84.12 % |
Parental protein coverage: | 90.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGG-IIGVKGAKIKELRENT-QTTI |
GLQLPSPTATSQLPL.SDAV.CLNYQH.KGSDFD....L.IHQSLA.G.I.GVKGAKIKEL.....QTTI | |
Retrocopy | GLQLPSPTATSQLPLRSDAVGCLNYQHCKGSDFD--KKLSIHQSLAKG>ILGVKGAKIKELEKTCMQTTI |
Parental | KLF-QECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRR |
K.F.QECCPHSTDRVVLIGGK.DRVVECIKIILDLISESPIKG.AQP.DPNFYDETYDYG.FTMM.DD.R | |
Retrocopy | KHF>QECCPHSTDRVVLIGGKADRVVECIKIILDLISESPIKGCAQPHDPNFYDETYDYGSFTMMSDDCR |
Parental | GRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRG |
G...GFPM.GRGGFDRMPPGRGGRPMPPSRRDYDDMSPR.GPP.PPPGRG..G.SRARNLPLP.PP.PRG | |
Retrocopy | GHLLGFPMPGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRQGPPLPPPGRGDWGISRARNLPLPSPPLPRG |
Parental | GDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPI |
GDLMAYDRRGRPGD.YDGMVGFSAD.TW.SAID.WSPSEWQMAYEPQGGSGYDY.YA...G.YGDLGGPI | |
Retrocopy | GDLMAYDRRGRPGDHYDGMVGFSADTTWGSAIDIWSPSEWQMAYEPQGGSGYDYFYAVVHG*YGDLGGPI |
Parental | ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIK-IDEPLEGSEDRIITIT-GTQDQIQNAQYLLQNSV |
ITTQVTIPKDLA.SII.KGGQ.IKQI.HESGAS.K.I.EPLEGSED.I.TIT..TQDQIQNA.YLLQN.V | |
Retrocopy | ITTQVTIPKDLAVSIIEKGGQQIKQIHHESGASTK<INEPLEGSEDGILTIT<TTQDQIQNAPYLLQNNV |
Parental | KQYADVEGF |
KQYADVEGF | |
Retrocopy | KQYADVEGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 37 .53 RPM | 410 .72 RPM |
SRP012922_cerebellum | 26 .39 RPM | 287 .58 RPM |
SRP012922_heart | 7 .19 RPM | 109 .98 RPM |
SRP012922_kidney | 15 .61 RPM | 225 .61 RPM |
SRP012922_liver | 14 .86 RPM | 191 .03 RPM |
SRP012922_lung | 24 .59 RPM | 315 .53 RPM |
SRP012922_quadricep_muscle | 13 .85 RPM | 124 .10 RPM |
SRP012922_spleen | 44 .07 RPM | 437 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000026 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008688 | 6 retrocopies | |
Dipodomys ordii | ENSDORG00000016024 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015500 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000026567 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021546 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003486 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019327 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001196 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |