Parental gene:

HNRNPK, ENSDNOG00000000026

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_5186:6569..12705(-)


>ENSDNOG00000000026
TACAATGCCAGTGTTTCAGTCCCAGACAGCAGTGGCCCCGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCTGCAGTTGCCATCACCCACTGCAACCAGCCAGCTCCCGC
TCGAATCTGATGCTGTGGAATGCTTAAATTATCAACACTATAAAGGAAGCGACTTTGACTGCGAGTTGAGACTGTTGATT
CATCAGAGTCTGGCAGGAGGAATTATTGGGGTCAAAGGTGCTAAAATCAAAGAACTTCGAGAGAACACACAGACAACAAT
CAAGCTTTTCCAGGAATGCTGTCCTCATTCCACCGACAGAGTCGTTCTTATTGGAGGAAAACCTGATAGGGTTGTAGAGT
GCATAAAGATCATCCTTGATCTTATATCTGAGTCTCCCATCAAAGGACGTGCACAGCCTTATGATCCCAATTTTTATGAT
GAAACTTATGATTATGGTGGTTTTACAATGATGTTTGATGACCGCCGTGGACGTCCCGTGGGATTTCCCATGCGGGGAAG
AGGTGGTTTTGACAGAATGCCTCCTGGTCGGGGTGGGCGTCCAATGCCTCCATCTAGAAGAGACTATGATGATATGAGCC
CTCGTCGAGGACCTCCTCCACCGCCTCCTGGACGAGGTGGCCGGGGTGGCAGCAGAGCTCGGAATCTTCCTCTTCCACCA
CCACCACCGCCTAGAGGAGGAGATCTAATGGCTTATGACAGAAGAGGTAGACCTGGAGACCGTTATGATGGCATGGTTGG
ATTCAGTGCTGATGAAACTTGGGACTCTGCAATAGACACATGGAGCCCATCAGAATGGCAGATGGCTTATGAACCACAGG
GTGGCTCTGGATATGATTATTCCTATGCAGGGGGTCGTGGCTCATATGGTGATCTTGGTGGACCTATTATTACTACACAA
GTAACTATTCCCAAAGATTTGGCTGGATCTATTATTGGGAAAGGTGGTCAGCGGATTAAACAAATCCGTCATGAGTCAGG
AGCTTCAATCAAAATTGATGAGCCTTTAGAAGGATCTGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGATAC
AGAATGCACAGTATTTGCTGCAGAACAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 410 .72 RPM
SRP012922_cerebellum 287 .58 RPM
SRP012922_heart 109 .98 RPM
SRP012922_kidney 225 .61 RPM
SRP012922_liver 191 .03 RPM
SRP012922_lung 315 .53 RPM
SRP012922_quadricep_muscle 124 .10 RPM
SRP012922_spleen 437 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000008688 other_paralog 6 retrogenes
retro_dnov_1146, retro_dnov_1399, retro_dnov_1672, retro_dnov_1823, retro_dnov_2434, retro_dnov_452,
Dipodomys ordii ENSDORG00000016024 ortholog_one2one 1 retrogene
retro_dord_673,
Gorilla gorilla ENSGGOG00000015500 possible_ortholog 2 retrogenes
retro_ggor_1764, retro_ggor_1866,
Loxodonta africana ENSLAFG00000026567 ortholog_one2one 1 retrogene
retro_lafr_809,
Macaca mulatta ENSMMUG00000018871 possible_ortholog 1 retrogene
retro_mmul_2111,
Monodelphis domestica ENSMODG00000008402 possible_ortholog 1 retrogene
retro_mdom_1666,
Mus musculus ENSMUSG00000021546 possible_ortholog 2 retrogenes
retro_mmus_1131, retro_mmus_2137,
Nomascus leucogenys ENSNLEG00000003486 ortholog_one2one 3 retrogenes
retro_nleu_1178, retro_nleu_1815, retro_nleu_973,
Otolemur garnettii ENSOGAG00000007478 possible_ortholog 3 retrogenes
retro_ogar_2635, retro_ogar_2966, retro_ogar_3086,
Pongo abelii ENSPPYG00000019327 possible_ortholog 3 retrogenes
retro_pabe_2105, retro_pabe_2106, retro_pabe_42,
Sarcophilus harrisii ENSSHAG00000017109 possible_ortholog 1 retrogene
retro_shar_820,
Tarsius syrichta ENSTSYG00000001196 ortholog_one2one 3 retrogenes
retro_tsyr_1664, retro_tsyr_1796, retro_tsyr_2149,
Tursiops truncatus ENSTTRG00000004906 possible_ortholog 1 retrogene
retro_ttru_1622,
Tursiops truncatus ENSTTRG00000016693 possible_ortholog 7 retrogenes
retro_ttru_1144, retro_ttru_180, retro_ttru_1922, retro_ttru_444, retro_ttru_813, retro_ttru_930, retro_ttru_937,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1433 76.52 66.16
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2. retro_dnov_1820 72.20 51.15
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3. retro_dnov_2316 84.12 90.08
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4. retro_dnov_2638 62.79 64.12
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Download FASTA sequences of all ENSDNOG00000000026 retrocopies