RetrogeneDB ID: | retro_tsyr_1832 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_611880:251..794(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000014640 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.92 % |
Parental protein coverage: | 85.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | YGGAPGGPAFPGQTQ-DPLYGYFAAVAGQ-DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD |
YG..PGGP.F.GQT..DPLYGYFA.V.GQ.D.QID.DELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD | |
Retrocopy | YGRDPGGPGFLGQTH>DPLYGYFASVVGQ>DRQIDSDELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD |
Parental | MSGTMGFNEFKELWA-VLNGWRQHFISFDSDRSGT-VDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK |
MS.TMGFNEFKEL.A..L..WRQ.FISFDSD.S...V..Q.LQKALT.MGFRLSPQ.VNS.AK.YS.NGK | |
Retrocopy | MSSTMGFNEFKELLA<ILTDWRQGFISFDSDWSEK<VNLQGLQKALTIMGFRLSPQSVNSFAKWYSSNGK |
Parental | ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV |
I.F.DY.A..VKLR.L.DSF.R.DTAQQGVVNFPYDDFIQCVMSV | |
Retrocopy | IIFGDYTARYVKLRVLADSF*RGDTAQQGVVNFPYDDFIQCVMSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001855 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010096 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000000210 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027380 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000010355 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018313 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007438 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000049780 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004372 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004434 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014640 | 1 retrocopy |
retro_tsyr_1832 ,
|
Xenopus tropicalis | ENSXETG00000008793 | 1 retrocopy |