RetrogeneDB ID: | retro_tsyr_2004 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_77596:6188..6944(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TARDBP | ||
Ensembl ID: | ENSTSYG00000004077 | ||
Aliases: | None | ||
Description: | TAR DNA binding protein [Source:HGNC Symbol;Acc:11571] |
Percent Identity: | 76.28 % |
Parental protein coverage: | 61.11 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 0 |
Parental | EIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMD |
.IP.EDDG.VLL..VTAQFPGACG..YRN.VSQCMR...L.EGIL.APDA.WGNLVYVVN.PKDNKRK.. | |
Retrocopy | QIPAEDDGEVLLFLVTAQFPGACGPCYRNSVSQCMRDI*LEEGILQAPDADWGNLVYVVN*PKDNKRKIN |
Parental | ETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYE |
E.D.SS.VKVKR..QKT..LI.LGL.W.TTEQ.LK.YFSTFG.VLMVQVKKDIKT.HSKGFGFV.FTEYE | |
Retrocopy | EIDTSS*VKVKRVAQKTFNLIMLGLLWETTEQNLKQYFSTFGKVLMVQVKKDIKTRHSKGFGFVHFTEYE |
Parental | TQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPF |
.QVKVMS..HM.DG...DCK.PNSKQSPDEPLRSRKVFVG.C.EDMTAD.L.QF.C.Y.E.VDVFI.KPF | |
Retrocopy | IQVKVMS*QHMRDG***DCKFPNSKQSPDEPLRSRKVFVGAC-EDMTADKLWQFLCWYREEVDVFIRKPF |
Parental | RAFAFVTFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSSRQ |
RAF.FV.FA.DQVAQSL.GEDLI.K.I.VHIS.A.PKHNS.R. | |
Retrocopy | RAFTFVMFAGDQVAQSLSGEDLITKVINVHISSAAPKHNSDRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004077 | 1 retrocopy |
retro_tsyr_2004 ,
|
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |