RetrogeneDB ID: | retro_sscr_652 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:149170947..149171610(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000023126 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.4 % |
Parental protein coverage: | 53.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSEYIRVT-DENDEPIEIPSEDD-GTVLLSTVTAQ-FPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGW |
MSEY..V..D.N.E..E..SE.D..TVL..TVTAQ.F.G..GL..RNPVSQ..RGV.LVEGI.HAP.AG. | |
Retrocopy | MSEYTGVREDKNGELLEVLSEED<STVLWPTVTAQ>FSGVWGLPCRNPVSQYTRGVYLVEGIPHAPHAGY |
Parental | GNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD |
GNLVYVVNYPKDNKR.MD.TD.SSAV.VKR.VQ.TSD.IVLG.PWKTTEQDLK.YFSTFG.VL.VQVKK. | |
Retrocopy | GNLVYVVNYPKDNKRRMDGTDPSSAVTVKREVQTTSDVIVLGRPWKTTEQDLKAYFSTFGKVLRVQVKKN |
Parental | IKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELQ |
.KT.HSKGFGFV.F.EYETQVKV.SQRHM....WCDC.L.NSKQSPDEPLRSR.V.VG.C.EDMTAD.LQ | |
Retrocopy | VKTHHSKGFGFVHFVEYETQVKVISQRHMVERQWCDCNL*NSKQSPDEPLRSRRVLVGHCAEDMTADALQ |
Parental | QFFCQYGEVVDVF |
Q...........F | |
Retrocopy | QWWLSSFQAIQGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 9 .95 RPM |
SRP014902_testis | 0 .00 RPM | 37 .62 RPM |
SRP018288_heart | 0 .03 RPM | 29 .83 RPM |
SRP018288_kidney | 0 .00 RPM | 44 .92 RPM |
SRP018288_liver | 0 .00 RPM | 23 .51 RPM |
SRP018288_lung | 0 .00 RPM | 41 .44 RPM |
SRP018856_adipose | 0 .14 RPM | 96 .77 RPM |
SRP035408_brain | 0 .00 RPM | 16 .20 RPM |
SRP035408_liver | 0 .00 RPM | 17 .20 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
EW612694 | 149171074 | 149171177 | 100 | 103 | 0 | 103 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002381 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008531 | 1 retrocopy | |
Homo sapiens | ENSG00000120948 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041459 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000136 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy |
retro_sscr_652 ,
|
Tarsius syrichta | ENSTSYG00000004077 | 1 retrocopy | |
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |