Parental gene:

ENSSSCG00000023126

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:6:65134428..65140899(+)


>ENSSSCG00000023126
ATGTCTGAATATATTCGGGTAACCGATGAGAATGACGAGCCCATTGAAATACCATCAGAAGACGATGGGACAGTGTTGCT
GTCCACGGTTACAGCCCAGTTTCCAGGAGCGTGTGGGCTGCGCTACAGGAATCCAGTGTCCCAGTGTATGAGAGGTGTCC
GCCTGGTAGAAGGAATTCTGCATGCCCCTGATGCTGGCTGGGGCAATCTGGTATATGTTGTCAACTATCCCAAAGATAAC
AAAAGAAAAATGGATGAAACAGATGCCTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCTGATTTAATAGT
GTTGGGTCTCCCATGGAAGACGACTGAACAGGATCTAAAAGAATATTTTAGCACCTTTGGAGAGGTTCTTATGGTTCAGG
TCAAGAAAGATATTAAAACTGGTCATTCAAAAGGATTTGGCTTTGTTCGTTTTACGGAATATGAAACCCAGGTTAAAGTA
ATGTCACAGCGACATATGATAGATGGACGATGGTGTGACTGTAAACTTCCAAATTCTAAGCAAAGCCCAGATGAGCCTTT
GAGAAGCAGAAAGGTGTTTGTTGGGCGCTGTACAGAGGACATGACTGCTGATGAGCTGCAGCAGTTCTTTTGCCAGTACG
GAGAAGTGGTAGATGTCTTCATTCCCAAACCATTCAGGGCTTTTGCCTTTGTTACATTTGCAGATGATCAGGTCGCCCAG
TCTCTTTGTGGAGAGGACTTGATCATTAAAGGAATCAGCGTACATATATCCAATGCTGAACCTAAACACAATAGCAATAG
ACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGCTTTGGTAACAGTAGAGGGG
GTGGAGCTGGTTTGGGGAACAATCAAGGTAGTAACATGGGTGGAGGGATGAACTTTGGTGCTTTCAGCATCAATCCAGCG
ATGATGGCTGCAGCCCAGGCGGCTCTGCAGAGCAGCTGGGGTATGATGGGCATGTTAGCCAGTCAGCAGAACCAGTCAGG
CCCATCGGGTAATAACCAAAGCCAAGGCAACATGCAAAGAGAGCCAAACCAGGCCTTTGGTTCTGGAAATAACTCGTATA
GTGGTTCTAATTCAGGGGCAGCGATTGGTTGGGGATCAGCATCAAATGCAGGGTCAGGCAGTGGTTTTAATGGAGGCTTT
GGCTCAAGCATGGATTCCAAATCTTCGGGCTGGGGAATGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 9 .95 RPM
SRP014902_testis 37 .62 RPM
SRP018856_adipose 96 .77 RPM
SRP018288_kidney 44 .92 RPM
SRP018288_lung 41 .44 RPM
SRP018288_liver 23 .51 RPM
SRP018288_heart 29 .83 RPM
SRP035408_liver 17 .20 RPM
SRP035408_brain 16 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002381 possible_ortholog 2 retrogenes
retro_cjac_2457, retro_cjac_525,
Dasypus novemcinctus ENSDNOG00000008531 possible_ortholog 1 retrogene
retro_dnov_2262,
Homo sapiens ENSG00000120948 possible_ortholog 2 retrogenes
retro_hsap_1209, retro_hsap_3637,
Macaca mulatta ENSMMUG00000007456 possible_ortholog 1 retrogene
retro_mmul_1847,
Mus musculus ENSMUSG00000041459 possible_ortholog 1 retrogene
retro_mmus_1958,
Nomascus leucogenys ENSNLEG00000009512 possible_ortholog 2 retrogenes
retro_nleu_201, retro_nleu_819,
Pongo abelii ENSPPYG00000001894 possible_ortholog 1 retrogene
retro_pabe_1008,
Pan troglodytes ENSPTRG00000000136 possible_ortholog 2 retrogenes
retro_ptro_2460, retro_ptro_828,
Tarsius syrichta ENSTSYG00000004077 ortholog_one2many 1 retrogene
retro_tsyr_2004,
Drosophila melanogaster FBgn0025790 possible_ortholog 1 retrogene
retro_dmel_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_652 70.40 53.27
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Download FASTA sequences of all ENSSSCG00000023126 retrocopies