RetrogeneDB ID: | retro_mmul_1847 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:98419382..98420178(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1975 | ||
Ensembl ID: | ENSMMUG00000007456 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.01 % |
Parental protein coverage: | 64.49 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | IRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV-RLVEGILHAPDAGWGNLVY |
I.VT.D.N.EPIEIPSEDDGTVLL.TV..QFPGACGL.YR.PVSQ..RGV..LVEGILHAP.AGWGN..Y | |
Retrocopy | IQVTRDKNYEPIEIPSEDDGTVLLPTVAVQFPGACGLPYRIPVSQGIRGV<LLVEGILHAPNAGWGNVIY |
Parental | VVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIV-LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG |
VVNY..DN.RK.D.TD.S.A.KVKRAV.KTS.L.V..G.PWKTTEQDLKEY.STF.E.LMV.VKKDL.TG | |
Retrocopy | VVNYSVDNYRKRDKTDISLAIKVKRAVPKTSALTV<VGFPWKTTEQDLKEYCSTFREILMV*VKKDLRTG |
Parental | HSKGFGFVRFTEYETQVKV-MSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFF |
.SKGFGFV.F..YETQVK..MSQ.H..D...C.C.LPNSKQ...E.LRS...F...CTE.M..D.L..FF | |
Retrocopy | YSKGFGFVHFIKYETQVKE<MSQQHKTDR**CGCTLPNSKQTLNEILRSKNMFLRCCTEKMNSDKLQQFF |
Parental | SQYGDVMDVFIPKPFRAFAFVT-FADDQIAQSLCGEDLIIKGISVHISNA-EPKHNSNRQLE |
.....V.DVFIPKP.R.FAF.T..ADD...QSLCGE.LIIKGIS.HISNA...KHN..RQ.E | |
Retrocopy | CHCREVIDVFIPKPLRNFAFLT<IADD*LVQSLCGEELIIKGISIHISNA<KCKHNISRQKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 119 .67 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 87 .90 RPM |
SRP007412_cerebellum | 0 .00 RPM | 184 .17 RPM |
SRP007412_heart | 0 .00 RPM | 102 .70 RPM |
SRP007412_kidney | 0 .00 RPM | 98 .71 RPM |
SRP007412_liver | 0 .00 RPM | 69 .03 RPM |
SRP007412_testis | 0 .00 RPM | 106 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3637 |
Pan troglodytes | retro_ptro_2460 |
Callithrix jacchus | retro_cjac_2457 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002381 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008531 | 1 retrocopy | |
Homo sapiens | ENSG00000120948 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy |
retro_mmul_1847 ,
|
Mus musculus | ENSMUSG00000041459 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000136 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004077 | 1 retrocopy | |
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |