RetrogeneDB ID: | retro_pabe_1008 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:60988213..60989024(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TARDBP | ||
Ensembl ID: | ENSPPYG00000001894 | ||
Aliases: | TARDBP, TDP43 | ||
Description: | TAR DNA-binding protein 43 [Source:RefSeq peptide;Acc:NP_001127597] |
Percent Identity: | 86.45 % |
Parental protein coverage: | 65.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSEYIRV-TEDENDEPIEIPSEDDGTVLLSTVTAQFPGACG-LRYRNPVSQCMRGVRLVEGILHAPDAGW |
MSEYIRV.TEDE.DEPIEI.S.DDGTVLLS.VTAQFPGACG.L.YRNPVSQCMRGVRLVEGILHAPDAGW | |
Retrocopy | MSEYIRV<TEDEKDEPIEILSKDDGTVLLSMVTAQFPGACG<LCYRNPVSQCMRGVRLVEGILHAPDAGW |
Parental | GNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD |
GNLVYVVNYPKDNKRKMDE.DASSAVKVKRAVQKTSDL.VLGL.WKTTEQDLKEYFSTFGEVLMVQVKKD | |
Retrocopy | GNLVYVVNYPKDNKRKMDEIDASSAVKVKRAVQKTSDLVVLGLTWKTTEQDLKEYFSTFGEVLMVQVKKD |
Parental | LKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELR |
.KTGHSK..GF..F.E.ETQVKVMSQ.HMIDGRWCDCKLPNSKQS.D.PLRS.KV.VG..TEDMT.DEL. | |
Retrocopy | SKTGHSKRLGFICFMEDETQVKVMSQLHMIDGRWCDCKLPNSKQSPDKPLRSIKVSVGH*TEDMTADELQ |
Parental | EFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLE |
.FF.QY..V.DVFI.KPFRAFAFVTFADDQ.AQS.CGE.LIIKGIS.HISNAEPKHNSNRQ.E | |
Retrocopy | QFFCQYREVVDVFILKPFRAFAFVTFADDQVAQSFCGEGLIIKGISIHISNAEPKHNSNRQKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 142 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 212 .80 RPM |
SRP007412_heart | 0 .00 RPM | 79 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 134 .44 RPM |
SRP007412_liver | 0 .00 RPM | 101 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1209 |
Pan troglodytes | retro_ptro_828 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002381 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008531 | 1 retrocopy | |
Homo sapiens | ENSG00000120948 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041459 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy |
retro_pabe_1008 ,
|
Pan troglodytes | ENSPTRG00000000136 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004077 | 1 retrocopy | |
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |