RetrogeneDB ID: | retro_ttru_1064 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_101773:46464..47121(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTTRG00000001960 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSTTRG00000009528 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 61.43 % |
Parental protein coverage: | 50.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AKSPLAASSSLSSVVGPIVEMNMGEAESRNSNFSTVG-AGSEDWVNAIEFVPGQPYCGRTAPSSTEAPLQ |
A..P.AASS......G...E....EA...N......G.AG.E.W..A.EFVPGQPY.GR.APS..EAPLQ | |
Retrocopy | AEAPPAASSRSLPLIGSAAERGFFEAKTDNAGLEAAGGAGAEGWEGAFEFVPGQPYRGRLAPSVSEAPLQ |
Parental | GSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEA |
.SVT....E.EQ.A....KQLC..A.VG.C..G..C.YLHGD.CDMCGLQVLHP.D.AQR..H.K.CIEA | |
Retrocopy | SSVT----EREQIALGVGKQLCRDAIVGQCFRGQSCIYLHGDICDMCGLQVLHPVDGAQRADHVKACIEA |
Parental | HEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP |
HEK.MELSFAVQRS.D.VCGICMEVVYEKAN....RFGILS.CNHTYCLKCIRKWRSA..F.S...KSC. | |
Retrocopy | HEKNMELSFAVQRSADKVCGICMEVVYEKANLNDCRFGILSSCNHTYCLKCIRKWRSAIMFGSTVLKSCL |
Parental | ECRITSNFVIPSE |
.CR.......PS. | |
Retrocopy | QCRDIPHL*LPSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008306 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000003953 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011015 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013474 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000948 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019564 | 2 retrocopies | |
Homo sapiens | ENSG00000133606 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023977 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002114 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010420 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029922 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001921 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009877 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018057 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000019766 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000016498 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000009528 | 2 retrocopies |
retro_ttru_1064 , retro_ttru_1128,
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