Parental gene:

Mkrn1, ENSMUSG00000029922

Aliases:Mkrn1, RFP
Description:makorin, ring finger protein, 1 [Source:MGI Symbol;Acc:MGI:1859353]
Organism:Mouse (Mus musculus)
Coordinates:6:39397803..39420462(-)


>ENSMUSG00000029922
ATGGCGGAGGCTGCGGCTCCCGGAACAACAGCCACAACATCAGGAGCAGGAGCGGCAGCGGCGGCGGTGGCAGCGGCCTC
CCTCACCTCTATCCCCACAGTCGCTGCCCCGTCCCCGGGGGCGGGAGGAGGGGGCGGCGGCAGCGACGGCAGCGGCGGCG
GCTGGACGAAACAGGTCACCTGCAGATACTTTATGCATGGGGTTTGTAAGGAAGGCGATAACTGTCGATACTCTCATGAC
CTCTCTGACAGTCCATACGGCGTAGTGTGCAAGTATTTTCAAAGAGGGTACTGTGTTTATGGAGACCGCTGCAGATACGA
ACACAGCAAGCCACTGAAACAGGAAGAAGTGACTGCTACTGATCTGAGTGCAAAACCATCCCTCGCTGCTTCCTCAAGTC
TCTCTTCTGGTGTTGGATCACTTGCTGAAATGAATTCAGGCGAAGCTGAGTCACGAAACCCAAGCTTTCCAACTGTAGGA
GCAGGTTCAGAGGACTGGGTGAATGCCATTGAGTTTGTCCCTGGGCAGCCCTACTGTGGCCGTACTGCCCCTTCCTGCAC
TGAAGTACCCCCGCAGGGTTCAGTGACCAAGGAAGAGTCAGAGAAGGAGCCAACTACGGTGGAGACAAAGAAGCAGCTTT
GCCCCTATGCTGCAGTGGGAGAGTGTCGCTATGGGGAAAACTGTGTGTATCTCCACGGAGACTCGTGTGACATGTGTGGC
CTGCAGGTCCTACACCCAGTGGATGCTGCCCAGAGGTCACAGCACATAAAATCTTGCATTGAGGCCCATGAGAAGGACAT
GGAGCTCTCTTTTGCTGTTCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACC
CCAGCGAGCGTCGCTTTGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGTATTCGCAAGTGGAGAAGTGCT
AAACAATTTGAGAGCAAGATCATAAAGTCCTGCCCCGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGAACTG
GGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCCATGAGCAACAAGGCGTGCAGGTATTTTG
ATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCA
CAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAGCCACTTCTGGGAGCTCATTGAGGAGAGAGA
GAACAACCCCTTTGACAACGACGAAGAGGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAG
GTGGGGACGACGAGCTGACAGACTCTGAGGACGAGTGGGACTTGTTTCACGATGAGCTGGAGGACTTTTATGACTTGGAT
CTATAG

Library Parental gene expression (RPM)
SRP007412_brain 112 .40 RPM
SRP007412_cerebellum 126 .10 RPM
SRP007412_heart 63 .35 RPM
SRP007412_kidney 65 .14 RPM
SRP007412_liver 29 .27 RPM
SRP007412_testis 671 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008306 ortholog_one2many 2 retrogenes
retro_btau_401, retro_btau_943,
Canis familiaris ENSCAFG00000003953 ortholog_one2many 2 retrogenes
retro_cfam_2157, retro_cfam_253,
Choloepus hoffmanni ENSCHOG00000011015 ortholog_one2one 3 retrogenes
retro_chof_173, retro_chof_2357, retro_chof_89,
Callithrix jacchus ENSCJAG00000013474 ortholog_one2many 2 retrogenes
retro_cjac_210, retro_cjac_2991,
Cavia porcellus ENSCPOG00000000948 possible_ortholog 1 retrogene
retro_cpor_109,
Dasypus novemcinctus ENSDNOG00000019564 ortholog_one2one 2 retrogenes
retro_dnov_1011, retro_dnov_388,
Felis catus ENSFCAG00000024942 ortholog_one2one 1 retrogene
retro_fcat_67,
Homo sapiens ENSG00000133606 ortholog_one2one 4 retrogenes
retro_hsap_1140, retro_hsap_4197, retro_hsap_4676, retro_hsap_4859,
Gorilla gorilla ENSGGOG00000023977 ortholog_one2many 4 retrogenes
retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Microcebus murinus ENSMICG00000002114 ortholog_one2one 1 retrogene
retro_mmur_1184,
Macaca mulatta ENSMMUG00000010420 ortholog_one2many 3 retrogenes
retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Mus musculus ENSMUSG00000000439 within_species_paralog 2 retrogenes
retro_mmus_3578, retro_mmus_544,
Nomascus leucogenys ENSNLEG00000001921 ortholog_one2one 4 retrogenes
retro_nleu_1027, retro_nleu_2167, retro_nleu_33, retro_nleu_939,
Otolemur garnettii ENSOGAG00000009877 ortholog_one2one 2 retrogenes
retro_ogar_3468, retro_ogar_424,
Pongo abelii ENSPPYG00000018057 ortholog_one2many 3 retrogenes
retro_pabe_3435, retro_pabe_3776, retro_pabe_947,
Pan troglodytes ENSPTRG00000019766 ortholog_one2one 5 retrogenes
retro_ptro_2849, retro_ptro_3106, retro_ptro_3234, retro_ptro_75, retro_ptro_776,
Sus scrofa ENSSSCG00000016498 ortholog_one2one 2 retrogenes
retro_sscr_43, retro_sscr_637,
Tarsius syrichta ENSTSYG00000009996 ortholog_one2one 3 retrogenes
retro_tsyr_1256, retro_tsyr_1525, retro_tsyr_508,
Tursiops truncatus ENSTTRG00000009528 ortholog_one2one 2 retrogenes
retro_ttru_1064, retro_ttru_1128,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2663 89.72 52.60
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Download FASTA sequences of all ENSMUSG00000029922 retrocopies