RetrogeneDB ID: | retro_chof_89 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_1766:20467..21449(+) | ||
Located in intron of: | ENSCHOG00000009625 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSCHOG00000011015 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 89.33 % |
Parental protein coverage: | 67.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VTCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQRGYCIYGDRCRYEHSKPLNQEEATAADLTAKSSL |
VTCRYFMHGVCKEGDNC.YSH.LSDSP..VVCKYFQRGYCIYGDRC.YE.SKPL.QEEATAADLTA.SSL | |
Retrocopy | VTCRYFMHGVCKEGDNCHYSHHLSDSP*AVVCKYFQRGYCIYGDRCGYEPSKPLKQEEATAADLTAESSL |
Parental | AASSSVSSVVGPLVEMSAGEAESRNSNFATIGAGTEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKE |
AA.S..SSVVG.LV.MS.GE.ESRNSNFATIG.GTED..N.IEFVPGQPYCG.TA.SCTEAPLQGSVTKE | |
Retrocopy | AAASGLSSVVGLLVKMSVGEPESRNSNFATIGVGTEDRENVIEFVPGQPYCGCTASSCTEAPLQGSVTKE |
Parental | ESEKEQTAVETKKQLCP-YAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDM |
ESEKEQT.VETKKQLCP.YAAVGECRYGENCVY.HGDSCD.CGLQVLHP.DAAQRSQHIK.CIEAHEKDM | |
Retrocopy | ESEKEQTSVETKKQLCP>YAAVGECRYGENCVYSHGDSCDTCGLQVLHPVDAAQRSQHIKYCIEAHEKDM |
Parental | ELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRIT |
ELSFAVQ.SKDMVCGICMEVVYEKANPSERRFGILS.CNHTYCLKCIRK.RSAKQFESKIIKSCPEC.IT | |
Retrocopy | ELSFAVQCSKDMVCGICMEVVYEKANPSERRFGILSKCNHTYCLKCIRKCRSAKQFESKIIKSCPECGIT |
Parental | SNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACRYFDEGRGSCPFGGN |
SNF.I.SEYWVEEKEEKQKL.QKYKEAMSNKACR.FDEGRGSCPFGGN | |
Retrocopy | SNFAILSEYWVEEKEEKQKLVQKYKEAMSNKACRCFDEGRGSCPFGGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |