RetrogeneDB ID: | retro_ttru_1128 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_105036:39225..40249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSTTRG00000009528 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 97.37 % |
Parental protein coverage: | 77.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SDGRSGGWTKQVTCRYFMHGVCKEGD-NCRYSHDLSDSPYGVVCKYFQRGYCIYGDRCRYEHSKPLKQEE |
SDG.SGGWTKQVTCRYFMHGVCKEGD.NCRYSHDLSDSPYGVVCKYFQRGYCIYGDRCRYEHSKPLKQEE | |
Retrocopy | SDGSSGGWTKQVTCRYFMHGVCKEGD>NCRYSHDLSDSPYGVVCKYFQRGYCIYGDRCRYEHSKPLKQEE |
Parental | ATATDLTAKSPLAASSSLSSVVGPIVEMNMGEAESRNSNFSTVGAGSEDWVNAIEFVPGQPYCGRTAPSS |
ATATDLTAKSPLAASSSLSSVVGPIVEMNM.EAESRNSNFSTVGAGSEDWVNAIEFVPGQPYCGRTAPSS | |
Retrocopy | ATATDLTAKSPLAASSSLSSVVGPIVEMNMCEAESRNSNFSTVGAGSEDWVNAIEFVPGQPYCGRTAPSS |
Parental | TEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHI |
TEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHI | |
Retrocopy | TEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHI |
Parental | KSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESK |
KSCIEAHEKDMELS.AVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESK | |
Retrocopy | KSCIEAHEKDMELSLAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESK |
Parental | IIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACR-YFDEGRGSCPFGGNCF |
IIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNK.....FDEGRGSCPFGGNCF | |
Retrocopy | IIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKGVQGIFDEGRGSCPFGGNCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008306 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000003953 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011015 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013474 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000948 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019564 | 2 retrocopies | |
Homo sapiens | ENSG00000133606 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023977 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002114 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010420 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029922 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001921 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009877 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018057 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000019766 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000016498 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000009528 | 2 retrocopies |
retro_ttru_1064, retro_ttru_1128 ,
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