RetrogeneDB ID:

retro_ttru_1082

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_102304:44113..45412(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EEF1G
Ensembl ID:ENSTTRG00000002459
Aliases:None
Description:eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213]


Retrocopy-Parental alignment summary:






>retro_ttru_1082
GGGACCCTGTACCCATATCTTGAAAACTGGAGGGCCTTCAAGGCCCTCATTGCCACTCAGTGCAGCAGGGCTCAGGTCTG
CGTGCTCACCGCACCACCCCGCTTCCATTTTGGCCAAACCAAACACACCCCCGAATTTCTCCATAGATTTCCTGCTGGCA
AGGTTCCAGCCTTTGAGGGTGACGATGGATTCTGTGTGTTCGAGAGCAATGCCATTGCCTACTATGCGAGCAACGAAGAC
TGCAGGGAAGTACTCCCAAAGCAGCAGCCCAGGTGGTGCAGGGGGTGAGCCTTGCTGATAGCAACATAGTTCCCCCAGCC
AGAACCTGGGTGTTCCACACCCATGAGCCTCATGCGCCGCAACAAGCAGACCACAGGGAATGCAAAGCAGGAGGTGAGGG
GAATTCTGGGGCCGCTGGACGCTCACTTGAAGACAAGGACTTTTCTGGTGGGCGAACGTGTGATACTGGCTGACATCACA
GTTGTCTGCACCCTGTTGTGGCTTTATAAACAGGTTCTGGAACCTTCTTTCTGCCAGGCCTTCCCTAATCCAAACCACTG
GTTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGGGAGGTGAAACTCTGTGAGAAAATGGCCCAATTTG
ATGCTAAAAAGTTTGCAGAGAGCCAGCCTAAAAAAGGACACCCCACAGAAAGAGAAAGCTTCTACGAGAAGAGAAGCAGA
AGCCCCAGGCCGAGCGGAAAGAGAAGAAGACGGCTGCCCCTGCTACTGAGGAGGAGCTGTATGGACGTGCGCGGGCAGCG
GCTGCTGAGCCGAAGGCCAAGGATCCCTTTGCTCCCCTGCCCAAGAGCACCTTGGCGTTGGATGAATTTAAGCGCAAGCA
CTCCAACGAGGACACACTCTCCGTGGCGCTGCCGTACTTTGGGGAGCACTTTGATAAAGATGGCTGGTGCCTGTGCTACG
CCGAGGACCGCTTCCCTGAAGAGCTCACCCAGACCTTCGTGAACTGCAACCTCATCACTGCAGTGTCGCAGCGACTGGAC
AAACTGAGGAAGAATGCCTTTGCCGGTGTCATTCTCTTTGGAAGCAACAGTAGCGGCTCCATTTCTGGAGTCTGGGTCTT
CCGAGGCCAGGAGCTTGCCTTTGCGCTGAGTCCAGATTGGCAGGGGTACTACGAGTCATACACATGCTGGAAACTGGATC
CCAGCAGCGAGGAGACTCAGACCGGTTCGAGAATACTCCTCCTGGGATGGGGCCTTCCAGCACGTGGGCAAAGCCTTCAA
CCCGGGCAAGATCTTCAAG

ORF - retro_ttru_1082 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.64 %
Parental protein coverage: 99.54 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESN
GTLY.Y.ENWRAFKALIA.Q.S.AQV.VL.APP.FHFGQT..TPEFL..FPAGKVPAFEGDDGFCVFESN
RetrocopyGTLYPYLENWRAFKALIATQCSRAQVCVLTAPPRFHFGQTKHTPEFLHRFPAGKVPAFEGDDGFCVFESN
ParentalAIAYYVSNEE-LRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPT-LGIMHHSKQATENAKEEVRRILGL
AIAYY.SNE..L.GSTP.AAAQVVQ.VS.ADS.IVPPA.TWVF.T....M...KQ.T.NAK.EVR.ILG.
RetrocopyAIAYYASNED<LQGSTPKAAAQVVQGVSLADSNIVPPARTWVFHT>MSLMRRNKQTTGNAKQEVRGILGP
ParentalLDAHLKTRTFLVGERVTLADITLVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCE
LDAHLKTRTFLVGERV.LADIT.VCTLLWLYKQVLEPSF.QAFPN.N.WFLTCINQPQFRAVLGEVKLCE
RetrocopyLDAHLKTRTFLVGERVILADITVVCTLLWLYKQVLEPSFCQAFPNPNHWFLTCINQPQFRAVLGEVKLCE
ParentalKMAQFDAKKFAESQPKK-DTPRKEKAS-REEKQKPQAERKEEKKAAAPAPEEELDECEQALAAEPKAKDP
KMAQFDAKKFAESQPKK.DTP.KEKAS.REEKQKPQAERKE.KK.AAPA.EEEL.....A.AAEPKAKDP
RetrocopyKMAQFDAKKFAESQPKK>DTPQKEKAS>REEKQKPQAERKE-KKTAAPATEEELYGRARAAAAEPKAKDP
ParentalFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRL
FA.LPKST..LDEFKRK.SNEDTLSVALPYF.EHFDKDGW.L.Y.E.RFPEELTQTF..CNLIT...QRL
RetrocopyFAPLPKSTLALDEFKRKHSNEDTLSVALPYFGEHFDKDGWCLCYAEDRFPEELTQTFVNCNLITAVSQRL
ParentalDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLD-PSSEETQTLVREYFS
DKLRKNAFA.VILFG.N.S.SISGVWVFRGQELAF.LSPDWQ..YESYT..KLD.P........VREY.S
RetrocopyDKLRKNAFAGVILFGSNSSGSISGVWVFRGQELAFALSPDWQGYYESYTCWKLD>PAARRLRP-VREYSS
ParentalWDGAFQHVGKAFNQGKIFK
WDGAFQHVGKAFN.GKIFK
RetrocopyWDGAFQHVGKAFNPGKIFK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1082 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1082 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000118431 retrocopy
Canis familiaris ENSCAFG000000158346 retrocopies
Callithrix jacchus ENSCJAG000000189496 retrocopies
Latimeria chalumnae ENSLACG000000147001 retrocopy
Myotis lucifugus ENSMLUG000000003421 retrocopy
Monodelphis domestica ENSMODG000000076911 retrocopy
Nomascus leucogenys ENSNLEG000000035282 retrocopies
Otolemur garnettii ENSOGAG000000008271 retrocopy
Ochotona princeps ENSOPRG000000145631 retrocopy
Pan troglodytes ENSPTRG000000037683 retrocopies
Pteropus vampyrus ENSPVAG000000034401 retrocopy
Rattus norvegicus ENSRNOG000000200758 retrocopies
Sus scrofa ENSSSCG000000130641 retrocopy
Tursiops truncatus ENSTTRG00000002459 3 retrocopies
retro_ttru_1082 , retro_ttru_1544, retro_ttru_1603,



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