Parental gene:

BT.62921, ENSBTAG00000011843

Aliases:None
Description:elongation factor 1-gamma [Source:RefSeq peptide;Acc:NP_001035577]
Organism:Cow (Bos taurus)
Coordinates:29:41614570..41624167(-)


>ENSBTAG00000011843
ATGGCGGCTGGGACCCTGTACACATATCCTGAAAACTGGAGGGCCTTCAAGGCCCTCATTGCCGCTCAGTACAGCGGGGC
TCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACCAACCGCACCCCCGAATTTCTCCGTAAATTTC
CTGCTGGCAAGGTTCCAGCCTTTGAGGGTGACGATGGATTCTGTGTGTTCGAGAGCAATGCCATTGCCTACTATGTGAGC
AACGAGGAGTTGCGGGGAAGTACTCCCGAGGCAGCAGCACAGGTGGTGCAGTGGGTGAGCTTTGCTGATAGCGACATAGT
GCCACCGGCCAGCACCTGGGTGTTCCCTACCTTAGGCATCATGCACCACAACAAGCAGGCCACAGAGAATGCAAAGGAGG
AGGTGAGGCGAATTCTGGGGCTGCTGGATGCTCACTTGAAGACGAGAACTTTTCTGGTGGGCGAACGCGTGACGCTGGCT
GACATCACAGTTGTCTGCACCCTGTTGTGGCTTTACAAACAGGTTCTGGAGCCTTCTTTCCGCCAGGCCTTCCCTAATAC
CAACCGCTGGTTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGAGAGGTGAAACTCTGTGAGAAAATGG
CCCAGTTTGATGCTAAAAAGTTTGCAGAGAGCCAGCCTAAAAAGGACACCCCACGGAAGGAGAAAGGTTCTCGAGAAGAG
AAGCTGAAGCCCCAGGCAGAGCGGAAGGAGGGCAAAGAGGAGAAGAAGGCGGCTGCCCCCGCTCCTGAGGAGGAGCTGGA
TGAATGTGAGCAGGCGCTGGCTGCCGAGCCGAAGGCCAAGGATCCCTTTGCCCATCTGCCCAAGAGTACCTTTGTGTTGG
ATGAATTTAAGCGCAAGTACTCCAACGAGGATACGCTCTCCGTGGCGCTGCCGTACTTTTGGGATCACTTTGATAAGGAT
GGCTGGTCCCTGTGGTACTCTGAGTATCGCTTCCCTGAAGAGCTCACCCAGACCTTCATGAGTTGCAACCTCATCACTGG
AATGTTCCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTCATTCTCTTTGGAACCAACAATAGCAGCTCCA
TTTCTGGGGTCTGGGTCTTTCGAGGCCAGGAGCTTGCTTTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATAC
ACATGGCGGAAACTGGATCCCGGCAGCGAGGAGACCCAGACGTTGGTTCGAGAATACTTCTGCTGGGAAGGGGCCTTCCA
GCATGTGGGCAAAGCCTTCAATCAGGGCAAGATCTTCAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 130 .41 RPM
SRP017611_kidney 333 .46 RPM
SRP017611_liver 212 .48 RPM
ERP005899_muscle 1173 .92 RPM
ERP005899_liver 126 .46 RPM
SRP030211_testis 573 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015834 possible_ortholog 6 retrogenes
retro_cfam_1241, retro_cfam_1398, retro_cfam_1862, retro_cfam_478, retro_cfam_638, retro_cfam_653,
Callithrix jacchus ENSCJAG00000018949 possible_ortholog 6 retrogenes
retro_cjac_1464, retro_cjac_1770, retro_cjac_1942, retro_cjac_3147, retro_cjac_841, retro_cjac_874,
Latimeria chalumnae ENSLACG00000014700 ortholog_one2one 1 retrogene
retro_lcha_82,
Myotis lucifugus ENSMLUG00000000342 ortholog_one2one 1 retrogene
retro_mluc_1110,
Monodelphis domestica ENSMODG00000007691 possible_ortholog 1 retrogene
retro_mdom_68,
Nomascus leucogenys ENSNLEG00000003528 possible_ortholog 2 retrogenes
retro_nleu_1510, retro_nleu_681,
Otolemur garnettii ENSOGAG00000000827 ortholog_one2one 1 retrogene
retro_ogar_1344,
Ochotona princeps ENSOPRG00000014563 ortholog_one2one 1 retrogene
retro_opri_814,
Pan troglodytes ENSPTRG00000003768 possible_ortholog 3 retrogenes
retro_ptro_1879, retro_ptro_2017, retro_ptro_3159,
Pteropus vampyrus ENSPVAG00000003440 ortholog_one2one 1 retrogene
retro_pvam_1239,
Rattus norvegicus ENSRNOG00000020075 possible_ortholog 8 retrogenes
retro_rnor_1312, retro_rnor_2126, retro_rnor_2235, retro_rnor_2269, retro_rnor_2468, retro_rnor_2617, retro_rnor_2928, retro_rnor_979,
Sus scrofa ENSSSCG00000013064 ortholog_one2one 1 retrogene
retro_sscr_164,
Tursiops truncatus ENSTTRG00000002459 ortholog_one2one 3 retrogenes
retro_ttru_1082, retro_ttru_1544, retro_ttru_1603,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1600 97.95 100.00
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Download FASTA sequences of all ENSBTAG00000011843 retrocopies