RetrogeneDB ID:

retro_ttru_1288

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_109751:78467..78797(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000000036
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1288
ATGGTGCTGCTGAAGAGTGAGCAGTTCCTGACAGAGCTGACCAGCCTCTTCCAGAAGTGCCAGTTGTCGGGCAGTGTGTT
CATCACCCTGAAGAAGTATGGTGGTCAAACTAAACCCATTCCAAGGGAGGGTTCTGTGGAGGGCTTTGAGCCCTCAGACA
ACAAATGTCTGTTAAGAGCTACCGATGGGAAAAAGAAGATCAGCACTGTGGTGAGCTCCAAAGAAGTGAATGAGTTTCAG
ATGGCTTATTCAAGCCTATTGAGAGCTAACATGGATGGGCTGGAGAAGAGGGACAAAAAGAGCCAGAGTAAGAAGAGCAA
AGCAGCGCAG

ORF - retro_ttru_1288 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.91 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRATDGKKKISTV
MVLL.SEQFLTELT.LFQKC.LSGSVFITLKKY.G.TKPIPR.GSVEGFEPSDNKCLLRATDGKKKISTV
RetrocopyMVLLKSEQFLTELTSLFQKCQLSGSVFITLKKYGGQTKPIPREGSVEGFEPSDNKCLLRATDGKKKISTV
ParentalVSSKEVNKFQMAYSNLLRANMDGLKKRDKKSKSKKSKAAQ
VSSKEVN.FQMAYS.LLRANMDGL.KRDKKS.SKKSKAAQ
RetrocopyVSSKEVNEFQMAYSSLLRANMDGLEKRDKKSQSKKSKAAQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1288 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1288 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000298892 retrocopies
Choloepus hoffmanni ENSCHOG000000053212 retrocopies
Callithrix jacchus ENSCJAG000000209123 retrocopies
Cavia porcellus ENSCPOG000000089942 retrocopies
Dasypus novemcinctus ENSDNOG000000111473 retrocopies
Equus caballus ENSECAG000000003191 retrocopy
Echinops telfairi ENSETEG000000118701 retrocopy
Homo sapiens ENSG000001403193 retrocopies
Gorilla gorilla ENSGGOG000000099211 retrocopy
Microcebus murinus ENSMICG000000076371 retrocopy
Macaca mulatta ENSMMUG000000160614 retrocopies
Monodelphis domestica ENSMODG000000292041 retrocopy
Mustela putorius furoENSMPUG000000083241 retrocopy
Nomascus leucogenys ENSNLEG000000024572 retrocopies
Otolemur garnettii ENSOGAG000000290702 retrocopies
Pongo abelii ENSPPYG000000063423 retrocopies
Pan troglodytes ENSPTRG000000069113 retrocopies
Pteropus vampyrus ENSPVAG000000021862 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000156279 retrocopies
Tupaia belangeri ENSTBEG000000166371 retrocopy
Tarsius syrichta ENSTSYG000000094674 retrocopies
Tursiops truncatus ENSTTRG00000000036 5 retrocopies
Vicugna pacos ENSVPAG000000102821 retrocopy



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