RetrogeneDB ID: | retro_ttru_1754 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_90194:32241..32784(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAD2L1 | ||
Ensembl ID: | ENSTTRG00000011017 | ||
Aliases: | None | ||
Description: | MAD2 mitotic arrest deficient-like 1 (yeast) [Source:HGNC Symbol;Acc:6763] |
Percent Identity: | 95.58 % |
Parental protein coverage: | 88.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDPELIKYLNNVVEQLKEWLCKCSVQKLVVVISNIESG |
.FGINSILYQRG.YPSETFTRVQKYGLTLLVTTDPELIK.LNNVVEQLKEWL.KCSVQKLVVVISNIESG | |
Retrocopy | AFGINSILYQRGLYPSETFTRVQKYGLTLLVTTDPELIKCLNNVVEQLKEWLYKCSVQKLVVVISNIESG |
Parental | EVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVP |
EVLERWQFDIECDKT.KDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVP | |
Retrocopy | EVLERWQFDIECDKTTKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVP |
Parental | EKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND |
EKWEESGPQFIT.SEEV.LRSFTTTIHKV.SMVAYKIPVND | |
Retrocopy | EKWEESGPQFITSSEEVHLRSFTTTIHKVSSMVAYKIPVND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012813 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013456 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009629 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015756 | 1 retrocopy | |
Homo sapiens | ENSG00000164109 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002516 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000029619 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011092 | 8 retrocopies | |
Macaca mulatta | ENSMMUG00000004875 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029910 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009092 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004054 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015029 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016401 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000025410 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011065 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000011017 | 1 retrocopy |
retro_ttru_1754 ,
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