RetrogeneDB ID: | retro_eeur_446 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_306967:113..532(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000009629 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.82 % |
Parental protein coverage: | 70.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAEQLKNWLYKCSVQK-LVVVISNIESGEVLERWQFDIECDKTAKDDTAPREKSQKAIQDEIRSVIRQIT |
....LK.....C.VQK.LV........G..L......I.CDKTAK.D...REKSQ....D.I.S..R..T | |
Retrocopy | VVDWLKGRSHMC*VQKLLVIISNIERVGLSLKDGNL-ILCDKTAKNDSPSREKSQEVV*DKINSASRVAT |
Parental | ATVTFLPLLEVSCSFDLLIYTDKD-LVVPEKWEESGPQFITNSEEVRLRSFTT--TIHKVNSMVAYKIPV |
..VTFLPLLEVSCSF.LL.YTDKD.LV.P.K.E.SGPQ.ITNSEEV.....TT...IHK.N.MVA..I.V | |
Retrocopy | GMVTFLPLLEVSCSFALLFYTDKD<LVFP*KCEKSGPQLITNSEEVCFNLLTTINIIHKINTMVACNISV |
Parental | SD |
.. | |
Retrocopy | NE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .69 RPM |
SRP017611_liver | 0 .00 RPM | 0 .48 RPM |