Parental gene:

MAD2L1, ENSPTRG00000016401

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:122482622..122490055(-)


>ENSPTRG00000016401
ATGGCGCTGCAGCTCTCCCGGGAGCAGGGAATCACCCTGCGCGGGAGCGCCGAAATCGTGGCCGAGTTCTTCTCATTCGG
CATCAACAGCATTTTATATCAGCGTGGCATATATCCATCTGAAACCTTTACTCGAGTGCAGAAATACGGACTCACCTTGC
TTGTAACTACTGATCTTGAGCTCATAAAATACCTAAATAATGTGGTGGAACAACTGAAAGATTGGTTATACAAGTGTTCA
GTTCAGAAACTGGTTGTAGTTATCTCAAATATTGAAAGTGGTGAGGTCCTGGAAAGATGGCAGTTTGATATTGAGTGTGA
CAAGACTGCAAAAGATGACAGTGCACCCAGAGAAAAGTCTCAGAAAGCTATCCAGGATGAAATCCGTTCAGTGATCAGAC
AGATCACAGCTACAGTGACATTTCTGCCACTGTTGGAAGTTTCTTGTTCATTTGATCTGCTGATTTATACAGACAAAGAT
TTGGTTGTACCTGAAAAATGGGAAGAGTCGGGACCACAGTTTATTACCAATTCTGAGGAAGTCCGCCTTCGTTCATTTAC
TACTACAATCCACAAAGTAAATAGCATGGTGGCCTACAAAATTCCTGTCAATGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .32 RPM
SRP007412_cerebellum 2 .98 RPM
SRP007412_heart 1 .19 RPM
SRP007412_kidney 1 .15 RPM
SRP007412_liver 1 .83 RPM
SRP007412_testis 15 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012813 ortholog_one2one 2 retrogenes
retro_chof_1340, retro_chof_2524,
Dasypus novemcinctus ENSDNOG00000013456 ortholog_one2one 1 retrogene
retro_dnov_1348,
Erinaceus europaeus ENSEEUG00000009629 possible_ortholog 1 retrogene
retro_eeur_446,
Echinops telfairi ENSETEG00000015756 ortholog_one2one 1 retrogene
retro_etel_724,
Homo sapiens ENSG00000164109 ortholog_one2one 2 retrogenes
retro_hsap_1350, retro_hsap_1707,
Gorilla gorilla ENSGGOG00000002516 ortholog_one2one 1 retrogene
retro_ggor_1281,
Loxodonta africana ENSLAFG00000029619 ortholog_one2many 1 retrogene
retro_lafr_1138,
Myotis lucifugus ENSMLUG00000011092 possible_ortholog 8 retrogenes
retro_mluc_1242, retro_mluc_165, retro_mluc_1802, retro_mluc_1904, retro_mluc_1986, retro_mluc_2434, retro_mluc_609, retro_mluc_696,
Macaca mulatta ENSMMUG00000004875 ortholog_one2one 2 retrogenes
retro_mmul_1292, retro_mmul_1701,
Mus musculus ENSMUSG00000029910 ortholog_one2one 2 retrogenes
retro_mmus_1684, retro_mmus_2573,
Nomascus leucogenys ENSNLEG00000009092 ortholog_one2one 1 retrogene
retro_nleu_1832,
Otolemur garnettii ENSOGAG00000004054 ortholog_one2many 1 retrogene
retro_ogar_199,
Pongo abelii ENSPPYG00000015029 ortholog_one2one 2 retrogenes
retro_pabe_1121, retro_pabe_1403,
Ictidomys tridecemlineatus ENSSTOG00000025410 ortholog_one2many 2 retrogenes
retro_itri_1592, retro_itri_327,
Tupaia belangeri ENSTBEG00000011065 possible_ortholog 3 retrogenes
retro_tbel_4460, retro_tbel_4666, retro_tbel_664,
Tursiops truncatus ENSTTRG00000011017 ortholog_one2one 1 retrogene
retro_ttru_1754,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_925 98.04 99.51
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2. retro_ptro_1156 72.73 64.39
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Download FASTA sequences of all ENSPTRG00000016401 retrocopies