RetrogeneDB ID: | retro_dnov_1348 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_184882:633..1163(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAD2L1 | ||
Ensembl ID: | ENSDNOG00000013456 | ||
Aliases: | None | ||
Description: | MAD2 mitotic arrest deficient-like 1 (yeast) [Source:HGNC Symbol;Acc:6763] |
Percent Identity: | 74.86 % |
Parental protein coverage: | 88.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | INSISYQRGIYPSETFTRVQKYGLTLLVTTDPELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVL |
I.SI.YQ.GI.PSETFT..QKYGLTLL.TTDPE.IK...NVV.QLK.WLYK.S.QK.VVVISNIESG.VL | |
Retrocopy | IDSILYQPGIHPSETFT*MQKYGLTLLQTTDPEFIK*HSNVVGQLKIWLYKWSIQKVVVVISNIESGKVL |
Parental | ERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVI-RQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEK |
ERWQF.IE.....K.....R.KSQKAIQ.EI..VI..QITATVTFLPL.EVSCSFD.LIYTDKDLVVPEK | |
Retrocopy | ERWQFNIE-*RDCKRGQCTRKKSQKAIQEEIHPVI<QQITATVTFLPLAEVSCSFDHLIYTDKDLVVPEK |
Parental | WEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND |
WE.SGPQFITNS.E..L..FTTTIHK..SMVAYKIPV.D | |
Retrocopy | WEQSGPQFITNSVEMGLCAFTTTIHKISSMVAYKIPVTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 3 .69 RPM |
SRP012922_cerebellum | 0 .41 RPM | 0 .55 RPM |
SRP012922_heart | 0 .00 RPM | 0 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .55 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .15 RPM | 1 .07 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .17 RPM |
SRP012922_spleen | 0 .00 RPM | 5 .04 RPM |