RetrogeneDB ID: | retro_ttru_1772 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_91194:14612..15391(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA4 | ||
Ensembl ID: | ENSTTRG00000009508 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 4 [Source:HGNC Symbol;Acc:19200] |
Percent Identity: | 71.76 % |
Parental protein coverage: | 87.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TKKTEEEGQGASGKPDILENSAKRTKSKRSIKNNRACCPRKMPQCCDSVKPQKKTMPIPPLPSILPPVNL |
T....EEGQGAS.KPDILENSAK.TK.KRSIK.NR.CCPRKMPQCCDSVKPQK.TMPI.PLPSI.PPVNL | |
Retrocopy | TSVDAEEGQGASSKPDILENSAKGTKRKRSIKDNRTCCPRKMPQCCDSVKPQK-TMPILPLPSIVPPVNL |
Parental | IHRDVVRAWCQQLKLSTKGPKLDGYKRLCEHAYPHQKN-IPATAEEARILSLA--RDIKMDEGTLHSEIV |
IHRDVV.AWCQQLKLSTKG.KLDG.K.LCEHAYPHQK..IPATA.EARILS....R..K.D.G.L..E.. | |
Retrocopy | IHRDVVCAWCQQLKLSTKGLKLDGSKELCEHAYPHQKR<IPATAKEARILSSPSRRKSKLDKGELPLECS |
Parental | HMAAPPEEGAPALEEVPALEGDPTLQEVVSTSASDPGTVFASWSRMTARAMKMESVQSQETCGVWWCVVH |
......E...P..EE.PALEG.PTLQ.VVSTS..D...VFASWSR..ARA.KME..QSQETCGVWWC.V. | |
Retrocopy | DKQMSFEGAVPPEEEAPALEGAPTLQGVVSTSVPDLEAVFASWSRIAARAVKMELEQSQETCGVWWCMVQ |
Parental | GRGLPANTEGWVHLQFHAGQAWVPEKRRRVSALFLPPAGNHPPPHLEDNMLC |
.R.LPANT.GWVHLQFH.GQAWVP.KR.RVSALFL.PAGN.P..H......C | |
Retrocopy | RRVLPANTVGWVHLQFHTGQAWVPDKRSRVSALFLLPAGNFPHLHTWRTICC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |