RetrogeneDB ID: | retro_ttru_252 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1688:397941..398565(+) | ||
Located in intron of: | ENSTTRG00000006965 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BAG1 | ||
Ensembl ID: | ENSTTRG00000010573 | ||
Aliases: | None | ||
Description: | BCL2-associated athanogene [Source:HGNC Symbol;Acc:937] |
Percent Identity: | 80. % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EAVGSEEVALSEEVARSEEMAAAGLSVTVTHSNEKHDLQVIPQEGCSEPIVQDLAQVVEEATGVPLPFQK |
.A.G.EE...S....R...MAAA..S.T.T..NEKHDLQVIPQEG.SEP.VQDLAQV..EATGVPLPFQK | |
Retrocopy | QAAGVEESMASLGPERG--MAAAEPSGTLTRINEKHDLQVIPQEGGSEPMVQDLAQVFSEATGVPLPFQK |
Parental | LIFKGKSLKEMETPLSALGIQNGCRVMLIGKKNSPEEEVEIKKLKDLEKSVEKIADQLEELSKELTGIQQ |
.IFKGKSLKEMETP.SA.GIQNGCRVML.GKKNSPEEEVE.KKLKDLEKSVEKIADQLEE..KEL.GIQQ | |
Retrocopy | PIFKGKSLKEMETPVSAPGIQNGCRVMLLGKKNSPEEEVELKKLKDLEKSVEKIADQLEERNKELSGIQQ |
Parental | GFLAKDLQAEALCKLDRRVIATVGQFMKILEEIDTLXXPENFKDSRMKRKGLVKKIQAFLAACDTVEQSI |
GFLAKDLQAEALCKLDRRV.AT..QFMKILEEIDTL..PEN.KDSRMKRKGLVK.IQAF.A.CDTV.QS. | |
Retrocopy | GFLAKDLQAEALCKLDRRVKATIEQFMKILEEIDTLMLPENCKDSRMKRKGLVKRIQAFPAECDTVGQSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017845 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012656 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008074 | 1 retrocopy | |
Equus caballus | ENSECAG00000017942 | 1 retrocopy | |
Homo sapiens | ENSG00000107262 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016534 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020148 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005204 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008945 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019138 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020856 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010573 | 2 retrocopies |
retro_ttru_252 , retro_ttru_946,
|