RetrogeneDB ID: | retro_ttru_684 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3070:382211..383015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUS1 | ||
Ensembl ID: | ENSTTRG00000007352 | ||
Aliases: | None | ||
Description: | nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21042] |
Percent Identity: | 89.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MTGLYELVWRVLHALLCLHRTLTSWLRVRFGTWNWIWRRCCRAASAAVLAPLGFTLPKLLAVGRNGRNRR |
MT..Y.LVWRVLHALLCLHR.LTSWLRV..GTWNWIW.RC.RAASAAVLAPLGFTLPKLLAVGR.GRNRR | |
Retrocopy | MTRVYKLVWRVLHALLCLHRMLTSWLRVWSGTWNWIWWRCRRAASAAVLAPLGFTLPKLLAVGRKGRNRR |
Parental | HHRHPRGGP-TPVAAHPRLRWRADGRSLEKLPVHMGLVIT--EEEQEPS-FSDIASLVVWCMAVGISYIS |
HHRHPRGGP.TP.A.HPRLRWRADG.SLEKLPVHMGLVIT..E.E...S.F.DIASLVVWCMAVG.SYIS | |
Retrocopy | HHRHPRGGP>TPAADHPRLRWRADGSSLEKLPVHMGLVITEEEQEPSFS<FWDIASLVVWCMAVGVSYIS |
Parental | VYDHQGIFKRNNSRLMDEILKQQQELLGLDCSKYSPEFANSNDKDDQVLNCQSAVKVLSPEDGKADIVRA |
.YDHQGI.KRNNSRLMDEILKQQQELLGLD.SKYSPEFANSNDKDDQVLNCQS.VKVLSPEDG..DIVRA | |
Retrocopy | FYDHQGILKRNNSRLMDEILKQQQELLGLDWSKYSPEFANSNDKDDQVLNCQSLVKVLSPEDGIVDIVRA |
Parental | AQDFCQLVAQQQKKCTDLDVDMLDSLLSSNGFPDPDLVLKFGPVDSTLGFLPWHIRLTEI |
AQDFCQLVAQQQKKCTDLDVDMLDSLLSSNGFPDPDL.LKFGPVDSTLGFLPWHIRLTEI | |
Retrocopy | AQDFCQLVAQQQKKCTDLDVDMLDSLLSSNGFPDPDLLLKFGPVDSTLGFLPWHIRLTEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001780 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008948 | 1 retrocopy | |
Homo sapiens | ENSG00000153989 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022321 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000007831 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011553 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025886 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018547 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003212 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007352 | 2 retrocopies |
retro_ttru_358, retro_ttru_684 ,
|