RetrogeneDB ID: | retro_vpac_128 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1987:173811..174168(-) | ||
Located in intron of: | ENSVPAG00000002731 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YPEL2 | ||
Ensembl ID: | ENSVPAG00000000381 | ||
Aliases: | None | ||
Description: | yippee-like 2 (Drosophila) [Source:HGNC Symbol;Acc:18326] |
Percent Identity: | 86.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MVKMTRSKTFQAYLPSCHRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTG |
MVK.T.SKT.QAYLPSCH.TYSCIHCRAHLANHDEL.SKSFQG.QGRAYLFNS.VNVGCGPAEE.VLL.G | |
Retrocopy | MVKTTSSKTLQAYLPSCHWTYSCIHCRAHLANHDELTSKSFQGCQGRAYLFNSLVNVGCGPAEEHVLLAG |
Parental | LHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIEL-EFTKDNGWD |
LHA.ADIYCENCKTTLGWK.EHAFESS.KYKEGKYIIEL....KDNGWD | |
Retrocopy | LHAIADIYCENCKTTLGWK*EHAFESSRKYKEGKYIIELAHIVKDNGWD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000018575 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029581 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009791 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000001013 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013138 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005518 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000381 | 1 retrocopy |
retro_vpac_128 ,
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