RetrogeneDB ID: | retro_itri_937 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393346.1:8273230..8273587(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YPEL2 | ||
Ensembl ID: | ENSSTOG00000001013 | ||
Aliases: | None | ||
Description: | yippee-like 2 (Drosophila) [Source:HGNC Symbol;Acc:18326] |
Percent Identity: | 70.59 % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VKMTRSKTFQAYLPSCHRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGL |
VKMTR.K.FQA.L..CHR.YSC.HC.AH.ANHD...SK.F.GSQ..A.LFN.VVN.GCGPAEE.V..TG. | |
Retrocopy | VKMTRFKSFQACLLLCHRIYSCTHCSAHMANHDGRLSKPFRGSQRGACLFNLVVNMGCGPAEEQVSQTGW |
Parental | HAVADIYCENCKTTLGW-KYEHAFESSQKYKEGKYIIELAHMIKDNGWD |
H.VADIYC.NCKTTLG..KYEHAFE..QK.KE.KY.I.LAHMIK..GWD | |
Retrocopy | HTVADIYCQNCKTTLGG*KYEHAFENNQKSKEDKYNIQLAHMIKNSGWD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000018575 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029581 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009791 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000001013 | 1 retrocopy |
retro_itri_937 ,
|
Tupaia belangeri | ENSTBEG00000013138 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005518 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000381 | 1 retrocopy |