RetrogeneDB ID: | retro_vpac_277 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_356:589819..590194(-) | ||
Located in intron of: | ENSVPAG00000007961 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TBCA | ||
Ensembl ID: | ENSVPAG00000001561 | ||
Aliases: | None | ||
Description: | tubulin folding cofactor A [Source:HGNC Symbol;Acc:11579] |
Percent Identity: | 83.2 % |
Parental protein coverage: | 93.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SRLPRLSAPPSRGARGTMADPRVRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQ |
SRLPRLSAPPSRGARGTMADPR.RQIKIKTG.VKRL..................EK.KAEDGENYAIKKQ | |
Retrocopy | SRLPRLSAPPSRGARGTMADPRMRQIKIKTGAVKRLXXXXXXXXXXXXXXXXXXEKLKAEDGENYAIKKQ |
Parental | AEILQESRMMIPDCQRRLEAAYSDLLQLLESEKDLEEAVEYKEARVVLDSVKLEA |
AEILQESRMMIPDCQRRLEAAYSDLLQLLESEKDLEEAVEYKEARVVLDSVKLEA | |
Retrocopy | AEILQESRMMIPDCQRRLEAAYSDLLQLLESEKDLEEAVEYKEARVVLDSVKLEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014223 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000002112 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019848 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000005316 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011853 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011849 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048342 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001561 | 1 retrocopy |
retro_vpac_277 ,
|