RetrogeneDB ID: | retro_cjac_2173 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:111918657..111918939(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000019848 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.3 % |
Parental protein coverage: | 87.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQVEILQESRMMIPDCQRRLEAAYLDLQQILE |
G.V..LVKEKVMYEKEAKQ.EEKIEKMRAEDGENYDIKKQ.EILQES.MMIPD.Q.RLEAAYLDLQQILE | |
Retrocopy | GMVAGLVKEKVMYEKEAKQEEEKIEKMRAEDGENYDIKKQIEILQESWMMIPDYQCRLEAAYLDLQQILE |
Parental | NEKDLEEAEEYKEARLVLDSMKLE |
NEKDL.EAEEYK.A.LVLDSMKLE | |
Retrocopy | NEKDLDEAEEYKGAHLVLDSMKLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .11 RPM | 6 .35 RPM |
SRP051959_heart | 0 .21 RPM | 9 .05 RPM |
SRP051959_kidney | 0 .09 RPM | 10 .32 RPM |
SRP051959_liver | 0 .09 RPM | 8 .12 RPM |
SRP051959_lung | 0 .31 RPM | 8 .02 RPM |
SRP051959_lymph_node | 0 .14 RPM | 7 .15 RPM |
SRP051959_skeletal_muscle | 0 .15 RPM | 7 .34 RPM |
SRP051959_spleen | 0 .17 RPM | 7 .65 RPM |