RetrogeneDB ID: | retro_acar_11 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343427.1:37827..38154(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000002208 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000014223 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADPRVRQIKIKTGVVKRLAKERVMYEKEAKQQEEKIEKMKTEDPDDYSIKKQIEVLQESRMMIPDCQRR |
MADPRVRQIKIKTGVVKRLAKERVMYEKEAKQQEEKIEKMKTEDPDDYSIKKQIEVLQ.SRMMIPDCQ.R | |
Retrocopy | MADPRVRQIKIKTGVVKRLAKERVMYEKEAKQQEEKIEKMKTEDPDDYSIKKQIEVLQVSRMMIPDCQCR |
Parental | LEAARADLVQLLENEKELEETDEYKDAFSVLESIKLDA |
LEAARADL.QLLENEKELEETDEYKDAFSVLESIKLDA | |
Retrocopy | LEAARADLAQLLENEKELEETDEYKDAFSVLESIKLDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .07 RPM | 130 .47 RPM |
SRP009831_brain | 0 .00 RPM | 98 .80 RPM |
SRP009831_dewlap | 0 .08 RPM | 67 .63 RPM |
SRP009831_embryo | 0 .12 RPM | 95 .79 RPM |
SRP009831_heart | 0 .00 RPM | 46 .64 RPM |
SRP009831_liver | 0 .00 RPM | 54 .40 RPM |
SRP009831_lung | 0 .00 RPM | 29 .77 RPM |
SRP009831_ovary | 0 .00 RPM | 71 .19 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 12 .24 RPM |