RetrogeneDB ID: | retro_acar_195 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343547.1:340541..340805(+) | ||
Located in intron of: | ENSACAG00000011437 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000014223 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.95 % |
Parental protein coverage: | 81.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KERVMYEKEAKQQEEKIEKMKTEDPDDYSIKKQIEVLQESRMMIPDCQRRLEAARADLVQLLENEKELEE |
K.RV..........E.I.KMKTEDPD.YS.KKQIEVLQESRMMIPDCQRRLEAARADLVQLLENEKELEE | |
Retrocopy | KGRVAMDQVTQLKKERIVKMKTEDPDEYSRKKQIEVLQESRMMIPDCQRRLEAARADLVQLLENEKELEE |
Parental | TDEYKDAFSVLESIKLDA |
TDEYKDAFSVLESIKLDA | |
Retrocopy | TDEYKDAFSVLESIKLDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 130 .47 RPM |
SRP009831_brain | 0 .05 RPM | 98 .80 RPM |
SRP009831_dewlap | 0 .00 RPM | 67 .63 RPM |
SRP009831_embryo | 0 .00 RPM | 95 .79 RPM |
SRP009831_heart | 0 .00 RPM | 46 .64 RPM |
SRP009831_liver | 0 .00 RPM | 54 .40 RPM |
SRP009831_lung | 0 .00 RPM | 29 .77 RPM |
SRP009831_ovary | 0 .04 RPM | 71 .19 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 12 .24 RPM |