RetrogeneDB ID:

retro_acar_142

Retrocopy
location
Organism:Anole lizard (Anolis carolinensis)
Coordinates:5:115652513..115652828(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSACAG00000014223
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_acar_142
ATGGCAGGCCCTCACATCGGGCAGATCAAAATCAAAACAGACGTAGTGAAACGTTTGGCAAAGGAAAGGGTTATGTGTGA
AAAGGAAGCAAATCAACAGGAAGAAAAGACTGAAAAAATGAAAACTGAAGATCCTGATGACTATTCAATAAAAAAGCAGA
TTGAAGTCTTGCAGGAATCTTGAATGATGATTCCAGATTGCCAACGCAGATTAGAGGCTGATCTTGTTCAACTATTAGAA
AATGAAAAGGAATTTGAAGAAACTGACGAATATAAAGATGCATTCTCAGTACTGGAGTCAATAAAGTTAGAAGCC

ORF - retro_acar_142 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.04 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADPRVRQIKIKTGVVKRLAKERVMYEKEAKQQEEKIEKMKTEDPDDYSIKKQIEVLQESRMMIPDCQRR
MA.P...QIKIKT.VVKRLAKERVM.EKEA.QQEEK.EKMKTEDPDDYSIKKQIEVLQES.MMIPDCQRR
RetrocopyMAGPHIGQIKIKTDVVKRLAKERVMCEKEANQQEEKTEKMKTEDPDDYSIKKQIEVLQES*MMIPDCQRR
ParentalLEAARADLVQLLENEKELEETDEYKDAFSVLESIKLDA
LEA...DLVQLLENEKE.EETDEYKDAFSVLESIKL.A
RetrocopyLEA---DLVQLLENEKEFEETDEYKDAFSVLESIKLEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP009831_adrenal 0 .00 RPM 130 .47 RPM
SRP009831_brain 0 .00 RPM 98 .80 RPM
SRP009831_dewlap 0 .00 RPM 67 .63 RPM
SRP009831_embryo 0 .00 RPM 95 .79 RPM
SRP009831_heart 0 .00 RPM 46 .64 RPM
SRP009831_liver 0 .00 RPM 54 .40 RPM
SRP009831_lung 0 .00 RPM 29 .77 RPM
SRP009831_ovary 0 .00 RPM 71 .19 RPM
SRP009831_skeletal_muscle 0 .00 RPM 12 .24 RPM
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_142 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_142 was not experimentally validated.

Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG00000014223 4 retrocopies
Choloepus hoffmanni ENSCHOG000000021122 retrocopies
Callithrix jacchus ENSCJAG000000198484 retrocopies
Cavia porcellus ENSCPOG000000121871 retrocopy
Echinops telfairi ENSETEG000000165721 retrocopy
Homo sapiens ENSG000001715303 retrocopies
Loxodonta africana ENSLAFG000000053161 retrocopy
Macaca mulatta ENSMMUG000000118531 retrocopy
Mus musculus ENSMUSG000000420433 retrocopies
Otolemur garnettii ENSOGAG000000101981 retrocopy
Ochotona princeps ENSOPRG000000024604 retrocopies
Procavia capensis ENSPCAG000000118491 retrocopy
Pongo abelii ENSPPYG000000155792 retrocopies
Pan troglodytes ENSPTRG000000170132 retrocopies
Rattus norvegicus ENSRNOG000000483421 retrocopy
Sorex araneus ENSSARG000000099431 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000098401 retrocopy
Tupaia belangeri ENSTBEG000000060346 retrocopies
Tarsius syrichta ENSTSYG000000005141 retrocopy
Vicugna pacos ENSVPAG000000015611 retrocopy



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