RetrogeneDB ID: | retro_vpac_387 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_1458:195758..196066(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSVPAG00000009781 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 70.19 % |
Parental protein coverage: | 89.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FLSHRLSKATGKMVENSPSPLPERAIYGFVLFLSSRFGFILYLVWAFIPESWLNS-LGLTYWPQKYWAVA |
F...RLSKATG.MVENSP.P.P.RA.YGFV..LSS.F...LYLV.AFI.ES.L.S.LGLTYW.QKY.AVA | |
Retrocopy | FEDPRLSKATGEMVENSPLPFPGRATYGFVRSLSSQFWCTLYLVRAFISESCLTS<LGLTYWAQKY*AVA |
Parental | LPVYLLITIVIGYLVLFGINMMSTSPLNSIHTIT |
.PVYL.ITI...Y..LFGINM.STSP.NSIH.IT | |
Retrocopy | MPVYLIITIETRYIDLFGINMISTSPPNSIHVIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009702 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000005475 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000020988 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008312 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014284 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001803 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000007711 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000009781 | 3 retrocopies |
retro_vpac_166, retro_vpac_387 , retro_vpac_639,
|